| 2017 | AAAI | Learning to Prune Dominated Action Sequences in Online Black-Box Planning. | Yuu Jinnai, Alex S. Fukunaga |
| 2017 | SoCS | Block-Parallel IDA* for GPUs. | Satoru Horie, Alex S. Fukunaga |
| 2016 | AAAI | Tiebreaking Strategies for A* Search: How to Explore the Final Frontier. | Masataro Asai, Alex S. Fukunaga |
| 2015 | CEC | Optimization of oil reservoir models using tuned evolutionary algorithms and adaptive differential evolution. | Claus Aranha, Ryoji Tanabe, Romain Louis Chassagne, Alex S. Fukunaga |
| 2014 | CEC | Improving the search performance of SHADE using linear population size reduction. | Ryoji Tanabe, Alex S. Fukunaga |
| 2014 | GECCO | On the pathological behavior of adaptive differential evolution on hybrid objective functions. | Ryoji Tanabe, Alex S. Fukunaga |
| 2009 | CEC | Massively parallel evolution of SAT heuristics. | Alex S. Fukunaga |
| 2009 | CEC | Combining multiple representations in a genetic algorithm for the multiple knapsack problem. | Alex S. Fukunaga, Satoshi Tazoe |
| 2009 | CEC | Fault tolerance in distributed genetic algorithms with tree topologies. | Yiyuan Gong, Alex S. Fukunaga |
| 2009 | CP | Search Spaces for Min-Perturbation Repair. | Alex S. Fukunaga |
| 2008 | CEC | A new grouping genetic algorithm for the Multiple Knapsack Problem. | Alex S. Fukunaga |
| 2008 | CPAIOR | Integrating Symmetry, Dominance, and Bound-and-Bound in a Multiple Knapsack Solver. | Alex S. Fukunaga |
| 2005 | IJCAI | Bin-Completion Algorithms for Multicontainer Packing and Covering Problems. | Alex S. Fukunaga, Richard E. Korf |
| 2004 | GECCO | Evolving Local Search Heuristics for SAT Using Genetic Programming. | Alex S. Fukunaga |
| 2004 | SAT | Efficient Implementations of SAT Local Search. | Alex S. Fukunaga |
| 2002 | AAAI | Automated Discovery of Composite SAT Variable-Selection Heuristics. | Alex S. Fukunaga |
| 2002 | AAAI | Staff Scheduling for Inbound Call Centers and Customer Contact Centers. | Alex S. Fukunaga, Ed Hamilton, Jason Fama, David Andre, Ofer Matan, Illah R. Nourbakhsh |
| 2000 | CEC | Genetic algorithm portfolios. | Alex S. Fukunaga |
| 1999 | GECCO | Portfolios of Genetic Algorithms. | Alex S. Fukunaga |
| 1998 | PPSN | Restart Scheduling for Genetic Algorithms. | Alex S. Fukunaga |
| 1997 | AAAI | Variable-Selection Heuristics in Local Search for SAT. | Alex S. Fukunaga |
| 1995 | IROS | Cooperative mobile robotics: antecedents and directions. | Y. Uny Cao, Alex S. Fukunaga, Andrew B. Kahng, F. Meng |