| 2018 | IJCAI | Automatic Blood Glucose Prediction with Confidence Using Recurrent Neural Networks. | John Martinsson, Alexander Schliep, Bjrn Eliasson, Christian Meijner, Simon Persson, Olof Mogren |
| 2018 | SBAC-PAD | Effect of Network Topology on the Performance of ADMM-Based SVMs. | Shirin Tavara, Alexander Schliep |
| 2018 | SOFSEM | An Optimization Problem Related to Bloom Filters with Bit Patterns. | Peter Damaschke, Alexander Schliep |
| 2016 | RECOMB | Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. | John Wiedenhoeft, Eric Brugel, Alexander Schliep |
| 2011 | WABI | Speeding Up Bayesian HMM by the Four Russians Method. | Md Pavel Mahmud, Alexander Schliep |
| 2008 | IJCNN | Comparative study on normalization procedures for cluster analysis of gene expression datasets. | Marclio Carlos Pereira de Souto, Daniel S. A. de Araujo, Ivan G. Costa, Rodrigo G. F. Soares, Teresa Bernarda Ludermir, Alexander Schliep |
| 2008 | IJCNN | Ranking and selecting clustering algorithms using a meta-learning approach. | Marclio Carlos Pereira de Souto, Ricardo Bastos Cavalcante Prudncio, Rodrigo G. F. Soares, Daniel S. A. de Araujo, Ivan G. Costa, Teresa Bernarda Ludermir, Alexander Schliep |
| 2008 | ISMB | Inferring differentiation pathways from gene expression. | Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep |
| 2007 | WABI | Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. | Alexander Schliep, Roland Krause |
| 2006 | ISMB | Context-specific independence mixture modeling for positional weight matrices. | Benjamin Georgi, Alexander Schliep |
| 2006 | ISMB | Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. | Alexander Schliep, Sven Rahmann |
| 2004 | ISMB | Optimal robust non-unique probe selection using Integer Linear Programming. | Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert |
| 2004 | ISMB | Robust inference of groups in gene expression time-courses using mixtures of HMMs. | Alexander Schliep, Christine Steinhoff, Alexander Schnhuth |
| 2003 | ISMB | Using hidden Markov models to analyze gene expression time course data. | Alexander Schliep, Alexander Schnhuth, Christine Steinhoff |
| 2002 | ECCB | ProClust: improved clustering of protein sequences with an extended graph-based approach. | P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schnhuth, Dietmar Schomburg, Rainer Schrader |