| 2026 | IWINAC | Valuated Multiset Reaction Systems with Maximal Evolution. | Victor Mitrana, Andrei Paun, Mihaela Paun |
| 2024 | ICTAC | Jump Complexity of Deterministic Finite Automata with Translucent Letters. | Szilrd Zsolt Fazekas, Victor Mitrana, Andrei Paun, Mihaela Paun |
| 2024 | SISY | Distributed Reaction Systems Viewed as Multi-Agent Systems. | Victor Mitrana, Andrei Paun, Mihaela Paun |
| 2019 | COMPLEXIS | How Complex is to Solve a Hard Problem with Accepting Splicing Systems. | Victor Mitrana, Andrei Paun, Mihaela Paun |
| 2019 | UC | Further Properties of Self-assembly by Hairpin Formation. | Henning Bordihn, Victor Mitrana, Andrei Paun, Mihaela Paun |
| 2008 | DNA | Sequentiality Induced by Spike Number in SNP Systems. | Oscar H. Ibarra, Andrei Paun, Alfonso Rodrguez-Patn |
| 2006 | DLT | P Systems with Proteins on Membranes and Membrane Division. | Andrei Paun, Bianca Popa |
| 2006 | DNA | Computing with Spiking Neural P Systems: Traces and Small Universal Systems. | Mihai Ionescu, Andrei Paun, Gheorghe Paun, Mario J. Prez-Jimnez |
| 2006 | UC | On Spiking Neural P Systems and Partially Blind Counter Machines. | Oscar H. Ibarra, Sara Woodworth, Fang Yu, Andrei Paun |
| 2005 | DNA | Counting Time in Computing with Cells. | Oscar H. Ibarra, Andrei Paun |
| 2004 | DNA | Computing Beyond the Turing Limit Using the H Systems. | Cezar Cmpeanu, Andrei Paun |
| 2002 | DNA | Unexpected Universality Results for Three Classes of P Systems with Symport/Antiport. | Mihai Ionescu, Carlos Martn-Vide, Andrei Paun, Gheorghe Paun |
| 2001 | DNA | On P Systems with Global Rules. | Andrei Paun |
| 1999 | FCT | State and Transition Complexity of Watson-Crick Finite Automata. | Andrei Paun, Mihaela Paun |