| 2025 | Front Matter, Table of Contents, Preface, Conference Organization. | |
| 2025 | An Axiomatic Study of Leveraging Blockers to Self-Assemble Arbitrary Shapes via Temperature Programming. | Matthew J. Patitz, Trent A. Rogers |
| 2025 | Secondary Structure Design for Cotranscriptional 3D RNA Origami Wireframes. | Pekka Orponen, Shinnosuke Seki, Antti Elonen |
| 2025 | Differentiable Programming of Indexed Chemical Reaction Networks and Reaction-Diffusion Systems. | Inhoo Lee, Salvador Buse, Erik Winfree |
| 2025 | A Coupled Reconfiguration Mechanism That Enables Powerful, Pseudoknot-Robust DNA Strand Displacement Devices with 2-Stranded Inputs. | Hope Amber Johnson, Anne Condon |
| 2025 | Reachability in Deletion-Only Chemical Reaction Networks. | Bin Fu, Timothy Gomez, Ryan Knobel, Austin Luchsinger, Aiden Massie, Marco Rodriguez, Adrian Salinas, Robert Schweller, Tim Wylie |
| 2025 | Tile Blockers as a Simple Motif to Control Self-Assembly: Kinetics and Thermodynamics. | Constantine G. Evans, Angel Cervera Roldan, Trent A. Rogers, Damien Woods |
| 2025 | Algorithmic Hardness of the Partition Function for Nucleic Acid Strands. | Gwendal Ducloz, Ahmed Shalaby, Damien Woods |
| 2025 | Leakless Polymerase-Dependent Strand Displacement Systems. | Zo Evelyn Mohalakealoha Derauf, Chris Thachuk |
| 2025 | Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin Deletion. | Da-Jung Cho, Szilrd Zsolt Fazekas, Shinnosuke Seki, Max Wiedenhft |
| 2025 | Synchronous Versus Asynchronous Tile-Based Self-Assembly. | Florent Becker, Phillip Drake, Matthew J. Patitz, Trent A. Rogers |
| 2025 | Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems. | Hamidreza Akef, Minki Hhan, David Soloveichik |
| 2024 | Front Matter, Table of Contents, Preface, Conference Organization. | |
| 2024 | Geometric Enumeration of Localized DNA Strand Displacement Reaction Networks. | Matthew R. Lakin, Sarika Kumar |
| 2024 | Designing 3D RNA Origami Nanostructures with a Minimum Number of Kissing Loops. | Antti Elonen, Pekka Orponen |
| 2024 | Simulation of the Abstract Tile Assembly Model Using Crisscross Slats. | Phillip Drake, Daniel Hader, Matthew J. Patitz |
| 2024 | Domain-Based Nucleic-Acid Minimum Free Energy: Algorithmic Hardness and Parameterized Bounds. | Erik D. Demaine, Timothy Gomez, Elise Grizzell, Markus Hecher, Jayson Lynch, Robert Schweller, Ahmed Shalaby, Damien Woods |
| 2024 | Learning and Inference in a Lattice Model of Multicomponent Condensates. | Cameron T. Chalk, Salvador Buse, Krishna Shrinivas, Arvind Murugan, Erik Winfree |
| 2023 | Front Matter, Table of Contents, Preface, Conference Organization. | |
| 2023 | Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer. | Ahmed Shalaby, Chris Thachuk, Damien Woods |
| 2023 | Thermodynamically Driven Signal Amplification. | Joshua Petrack, David Soloveichik, David Doty |
| 2023 | Optimal Information Encoding in Chemical Reaction Networks. | Austin Luchsinger, David Doty, David Soloveichik |
| 2023 | Revisiting Hybridization Kinetics with Improved Elementary Step Simulation. | Jordan Lovrod, Boyan Beronov, Chenwei Zhang, Erik Winfree, Anne Condon |
| 2023 | Reversible Bond Logic. | Hannah Amelie Earley |
| 2023 | Accelerating Self-Assembly of Crisscross Slat Systems. | David Doty, Hunter Fleming, Daniel Hader, Matthew J. Patitz, Lukas A. Vaughan |