| 2025 | DNA | Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems. | Hamidreza Akef, Minki Hhan, David Soloveichik |
| 2024 | PODC | Brief Announcement: Optimally Encoding Information in Chemical Reaction Networks. | Austin Luchsinger, David Doty, David Soloveichik |
| 2023 | DNA | Optimal Information Encoding in Chemical Reaction Networks. | Austin Luchsinger, David Doty, David Soloveichik |
| 2023 | DNA | Thermodynamically Driven Signal Amplification. | Joshua Petrack, David Soloveichik, David Doty |
| 2021 | DNA | Molecular Machines from Topological Linkages. | Keenan Breik, Austin Luchsinger, David Soloveichik |
| 2020 | DNA | CRNs Exposed: A Method for the Systematic Exploration of Chemical Reaction Networks. | Marko Vasic, David Soloveichik, Sarfraz Khurshid |
| 2020 | ICML | Deep Molecular Programming: A Natural Implementation of Binary-Weight ReLU Neural Networks. | Marko Vasic, Cameron T. Chalk, Sarfraz Khurshid, David Soloveichik |
| 2019 | DNA | SIMD||DNA: Single Instruction, Multiple Data Computation with DNA Strand Displacement Cascades. | Boya Wang, Cameron T. Chalk, David Soloveichik |
| 2018 | DNA | : Molecular Programming Language. | Marko Vasic, David Soloveichik, Sarfraz Khurshid |
| 2017 | DNA | Robust Detection in Leak-Prone Population Protocols. | Dan Alistarh, Bartlomiej Dudek, Adrian Kosowski, David Soloveichik, Przemyslaw Uznanski |
| 2017 | DNA | Thermodynamic Binding Networks. | David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods |
| 2017 | DNA | The Design Space of Strand Displacement Cascades with Toehold-Size Clamps. | Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik |
| 2017 | ICALP | Hardness of Computing and Approximating Predicates and Functions with Leaderless Population Protocols. | Amanda Belleville, David Doty, David Soloveichik |
| 2016 | DNA | Robustness of Expressivity in Chemical Reaction Networks. | Robert Brijder, David Doty, David Soloveichik |
| 2015 | DNA | Leakless DNA Strand Displacement Systems. | Chris Thachuk, Erik Winfree, David Soloveichik |
| 2014 | DNA | Probability 1 Computation with Chemical Reaction Networks. | Rachel Cummings, David Doty, David Soloveichik |
| 2012 | DNA | Deterministic Function Computation with Chemical Reaction Networks. | Ho-Lin Chen, David Doty, David Soloveichik |
| 2010 | DNA | Efficient Turing-Universal Computation with DNA Polymers. | Lulu Qian, David Soloveichik, Erik Winfree |
| 2009 | DNA | Time-Complexity of Multilayered DNA Strand Displacement Circuits. | Georg Seelig, David Soloveichik |
| 2008 | DNA | DNA as a Universal Substrate for Chemical Kinetics. | David Soloveichik, Georg Seelig, Erik Winfree |
| 2005 | DNA | Complexity of Compact Proofreading for Self-assembled Patterns. | David Soloveichik, Erik Winfree |
| 2004 | DNA | Complexity of Self-assembled Shapes. | David Soloveichik, Erik Winfree |