| 2025 | DNA | Synchronous Versus Asynchronous Tile-Based Self-Assembly. | Florent Becker, Phillip Drake, Matthew J. Patitz, Trent A. Rogers |
| 2025 | DNA | An Axiomatic Study of Leveraging Blockers to Self-Assemble Arbitrary Shapes via Temperature Programming. | Matthew J. Patitz, Trent A. Rogers |
| 2025 | SODA | Strict Self-Assembly of Discrete Self-Similar Fractals in the abstract Tile Assembly Model. | Florent Becker, Daniel Hader, Matthew J. Patitz |
| 2024 | DNA | Simulation of the Abstract Tile Assembly Model Using Crisscross Slats. | Phillip Drake, Daniel Hader, Matthew J. Patitz |
| 2024 | UC | Self-assembly of Patterns in the Abstract Tile Assembly Model. | Phillip Drake, Matthew J. Patitz, Scott M. Summers, Tyler Tracy |
| 2023 | DNA | Accelerating Self-Assembly of Crisscross Slat Systems. | David Doty, Hunter Fleming, Daniel Hader, Matthew J. Patitz, Lukas A. Vaughan |
| 2023 | ICALP | The Impacts of Dimensionality, Diffusion, and Directedness on Intrinsic Cross-Model Simulation in Tile-Based Self-Assembly. | Daniel Hader, Matthew J. Patitz |
| 2023 | SODA | The Need for Seed (in the abstract Tile Assembly Model). | Andrew Alseth, Matthew J. Patitz |
| 2022 | DNA | Universal Shape Replication via Self-Assembly with Signal-Passing Tiles (Extended Abstract). | Andrew Alseth, Daniel Hader, Matthew J. Patitz |
| 2021 | DNA | Self-Replication via Tile Self-Assembly (Extended Abstract). | Andrew Alseth, Daniel Hader, Matthew J. Patitz |
| 2021 | UC | Fractal Dimension of Assemblies in the Abstract Tile Assembly Model. | Daniel Hader, Matthew J. Patitz, Scott M. Summers |
| 2020 | SODA | The Impacts of Dimensionality, Diffusion, and Directedness on Intrinsic Universality in the abstract Tile Assembly Model. | Daniel Hader, Aaron Koch, Matthew J. Patitz, Michael Sharp |
| 2019 | DNA | Simulation of Programmable Matter Systems Using Active Tile-Based Self-Assembly. | John Calvin Alumbaugh, Joshua J. Daymude, Erik D. Demaine, Matthew J. Patitz, Andra W. Richa |
| 2019 | UC | Geometric Tiles and Powers and Limitations of Geometric Hindrance in Self-assembly. | Daniel Hader, Matthew J. Patitz |
| 2018 | DNA | Know When to Fold 'Em: Self-assembly of Shapes by Folding in Oritatami. | Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, Hadley Thomas |
| 2018 | DNA | Self-assembly of 3-D Structures Using 2-D Folding Tiles. | Jrme Durand-Lose, Jacob Hendricks, Matthew J. Patitz, Ian Perkins, Michael Sharp |
| 2018 | DNA | Hierarchical Growth Is Necessary and (Sometimes) Sufficient to Self-assemble Discrete Self-similar Fractals. | Jacob Hendricks, Joseph Opseth, Matthew J. Patitz, Scott M. Summers |
| 2018 | UC | Thermodynamically Favorable Computation via Tile Self-assembly. | Cameron T. Chalk, Jacob Hendricks, Matthew J. Patitz, Michael Sharp |
| 2016 | DNA | Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles - (Extended Abstract). | Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Hadley Thomas |
| 2016 | DNA | Resiliency to Multiple Nucleation in Temperature-1 Self-Assembly. | Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller, Scott M. Summers, Andrew Winslow |
| 2016 | FOCS | Universal Simulation of Directed Systems in the Abstract Tile Assembly Model Requires Undirectedness. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2016 | SODA | Computing in continuous space with self-assembling polygonal tiles (extended abstract). | Oscar Gilbert, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | DNA | Reflections on Tiles (in Self-Assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | ICALP | Binary Pattern Tile Set Synthesis Is NP-hard. | Lila Kari, Steffen Kopecki, Pierre-tienne Meunier, Matthew J. Patitz, Shinnosuke Seki |
| 2015 | MCU | The Simulation Powers and Limitations of Hierarchical Self-Assembly Systems. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | SODA | Universal Computation with Arbitrary Polyomino Tiles in Non-Cooperative Self-Assembly. | Sndor P. Fekete, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller |
| 2015 | UC | Replication of Arbitrary Hole-Free Shapes via Self-assembly with Signal-Passing Tiles. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2014 | COCOON | The Power of Duples (in Self-Assembly): It's Not So Hip to Be Square. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Scott M. Summers |
| 2014 | ICALP | One Tile to Rule Them All: Simulating Any Tile Assembly System with a Single Universal Tile. | Erik D. Demaine, Martin L. Demaine, Sndor P. Fekete, Matthew J. Patitz, Robert T. Schweller, Andrew Winslow, Damien Woods |
| 2014 | SODA | Intrinsic universality in tile self-assembly requires cooperation. | Pierre-Etienne Meunier, Matthew J. Patitz, Scott M. Summers, Guillaume Theyssier, Andrew Winslow, Damien Woods |
| 2014 | UC | Doubles and Negatives are Positive (in Self-assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2013 | DNA | Signal Transmission across Tile Assemblies: 3D Static Tiles Simulate Active Self-assembly by 2D Signal-Passing Tiles. | Jacob Hendricks, Jennifer E. Padilla, Matthew J. Patitz, Trent A. Rogers |
| 2013 | ICALP | The Two-Handed Tile Assembly Model Is Not Intrinsically Universal. | Erik D. Demaine, Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller, Scott M. Summers, Damien Woods |
| 2013 | STACS | Two Hands Are Better Than One (up to constant factors): Self-Assembly In The 2HAM vs. aTAM. | Sarah Cannon, Erik D. Demaine, Martin L. Demaine, Sarah Eisenstat, Matthew J. Patitz, Robert T. Schweller, Scott M. Summers, Andrew Winslow |
| 2013 | UC | Asynchronous Signal Passing for Tile Self-assembly: Fuel Efficient Computation and Efficient Assembly of Shapes. | Jennifer E. Padilla, Matthew J. Patitz, Raul Pena, Robert T. Schweller, Nadrian C. Seeman, Robert Sheline, Scott M. Summers, Xingsi Zhong |
| 2012 | FOCS | The Tile Assembly Model is Intrinsically Universal. | David Doty, Jack H. Lutz, Matthew J. Patitz, Robert T. Schweller, Scott M. Summers, Damien Woods |
| 2012 | ICALP | Self-assembly with Geometric Tiles. | Bin Fu, Matthew J. Patitz, Robert T. Schweller, Robert Sheline |
| 2012 | UC | An Introduction to Tile-Based Self-assembly. | Matthew J. Patitz |
| 2011 | DNA | Exact Shapes and Turing Universality at Temperature 1 with a Single Negative Glue. | Matthew J. Patitz, Robert T. Schweller, Scott M. Summers |
| 2011 | STACS | Self-Assembly of Arbitrary Shapes Using RNAse Enzymes: Meeting the Kolmogorov Bound with Small Scale Factor (extended abstract). | Erik D. Demaine, Matthew J. Patitz, Robert T. Schweller, Scott M. Summers |
| 2010 | FOCS | Strong Fault-Tolerance for Self-Assembly with Fuzzy Temperature. | David Doty, Matthew J. Patitz, Dustin Reishus, Robert T. Schweller, Scott M. Summers |
| 2010 | ISAAC | Identifying Shapes Using Self-assembly - (Extended Abstract). | Matthew J. Patitz, Scott M. Summers |
| 2010 | STACS | Intrinsic Universality in Self-Assembly. | David Doty, Jack H. Lutz, Matthew J. Patitz, Scott M. Summers, Damien Woods |
| 2009 | DNA | A Domain-Specific Language for Programming in the Tile Assembly Model. | David Doty, Matthew J. Patitz |
| 2009 | DNA | Limitations of Self-assembly at Temperature One. | David Doty, Matthew J. Patitz, Scott M. Summers |
| 2009 | UC | Random Number Selection in Self-assembly. | David Doty, Jack H. Lutz, Matthew J. Patitz, Scott M. Summers, Damien Woods |
| 2008 | CiE | Computability and Complexity in Self-assembly. | James I. Lathrop, Jack H. Lutz, Matthew J. Patitz, Scott M. Summers |
| 2008 | DNA | Self-assembly of Discrete Self-similar Fractals. | Matthew J. Patitz, Scott M. Summers |
| 2008 | UC | Self-assembly of Decidable Sets. | Matthew J. Patitz, Scott M. Summers |