| 2004 | SIGCSE | Highlighting programming language issues using mixed language programming nn Maple and C. | Andrew T. Phillips |
| 2004 | SIGCSE | Seven design rules for teaching students sound encapsulation and abstraction of object properties and member data. | Michael R. Wick, Daniel E. Stevenson, Andrew T. Phillips |
| 2003 | SIGCSE | Implementing CC2001: a breadth-first introductory course for a just-in-time curriculum design. | Andrew T. Phillips, Daniel E. Stevenson, Michael R. Wick |
| 2003 | SIGCSE | Exploring security vulnerabilities by exploiting buffer overflow using the MIPS ISA. | Andrew T. Phillips, Jack S. Eddy Tan |
| 2003 | SIGCSE | Implementing object equivalence in Java using the template method design pattern. | Daniel E. Stevenson, Andrew T. Phillips |
| 2002 | SIGCSE | Undergraduate computational science and engineering programs and courses. | Peter R. Turner, Angela B. Shiflet, Steve Cunningham, Kris Stewart, Andrew T. Phillips, Ignatios Vakalis |
| 2002 | SIGCSE | Using an environment chain model to teach inheritance in C++. | Michael R. Wick, Daniel E. Stevenson, Andrew T. Phillips |
| 1999 | RECOMB | Coupled optimization in protein docking. | Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck |
| 1997 | RECOMB | Protein structure prediction and potential energy landscape analysis using continuous global minimization. | Ken A. Dill, Andrew T. Phillips, J. Ben Rosen |