| 2016 | RECOMB | Locating a Tree in a Reticulation-Visible Network in Cubic Time. | Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang |
| 2013 | ICDE | YumiInt - A deep Web integration system for local search engines for Geo-referenced objects. | Eduard Constantin Dragut, Brian P. Beirne, Ali Neyestani, Badr Atassi, Clement T. Yu, Bhaskar DasGupta, Weiyi Meng |
| 2012 | MDM | Parking in Competitive Settings: A Gravitational Approach. | Daniel Ayala, Ouri Wolfson, Bo Xu, Bhaskar DasGupta, Jie Lin |
| 2011 | SAGT | On Communication Protocols That Compute Almost Privately. | Marco Comi, Bhaskar DasGupta, Michael Schapira, Venkatakumar Srinivasan |
| 2010 | ICALP | On Approximate Horn Formula Minimization. | Amitava Bhattacharya, Bhaskar DasGupta, Dhruv Mubayi, Gyrgy Turn |
| 2009 | AAIM | On Approximating an Implicit Cover Problem in Biology. | Mary V. Ashley, Tanya Y. Berger-Wolf, Wanpracha Art Chaovalitwongse, Bhaskar DasGupta, Ashfaq A. Khokhar, Saad I. Sheikh |
| 2009 | WADS | Approximating Transitive Reductions for Directed Networks. | Piotr Berman, Bhaskar DasGupta, Marek Karpinski |
| 2008 | APBC | Primer Selection Methods for Detection of Genomic Inversions and Deletions via PAMP. | Bhaskar DasGupta, Jin Jun, Ion I. Mandoiu |
| 2007 | ISMB | Reconstructing sibling relationships in wild populations. | Tanya Y. Berger-Wolf, Saad I. Sheikh, Bhaskar DasGupta, Mary V. Ashley, Isabel C. Caballero, Wanpracha Art Chaovalitwongse, Satya Lahari Putrevu |
| 2007 | WABI | A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence. | Rka Albert, Bhaskar DasGupta, Riccardo Dondi, Sema Kachalo, Eduardo D. Sontag, Alexander Zelikovsky, Kelly Westbrooks |
| 2007 | WABI | Topology Independent Protein Structural Alignment. | Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang |
| 2005 | ICCS | Highly Scalable Algorithms for Robust String Barcoding. | Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman |
| 2005 | WADS | Approximating the Online Set Multicover Problems via Randomized Winnowing. | Piotr Berman, Bhaskar DasGupta |
| 2004 | CPM | The Protein Sequence Design Problem in Canonical Model on 2D and 3D Lattices. | Piotr Berman, Bhaskar DasGupta, Dhruv Mubayi, Robert H. Sloan, Gyrgy Turn, Yi Zhang |
| 2002 | ICCS | A Comparative Study of Dirichlet and Neumann Conditions for Path Planning through Harmonic Functions. | Madhuri Karnik, Bhaskar DasGupta, Vinayak Eswaran |
| 2002 | SODA | Slice and dice: a simple, improved approximate tiling recipe. | Piotr Berman, Bhaskar DasGupta, S. Muthukrishnan |
| 2002 | SODA | Simple approximation algorithm for nonoverlapping local alignments. | Piotr Berman, Bhaskar DasGupta, S. Muthukrishnan |
| 2002 | WABI | Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. | Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder |
| 2001 | SODA | Improved approximation algorithms for rectangle tiling and packing. | Piotr Berman, Bhaskar DasGupta, S. Muthukrishnan, Suneeta Ramaswami |
| 2000 | ALT | On Approximate Learning by Multi-layered Feedforward Circuits. | Bhaskar DasGupta, Barbara Hammer |
| 2000 | STOC | Improvements in throughout maximization for real-time scheduling. | Piotr Berman, Bhaskar DasGupta |
| 1999 | HiPC | Generalized Approach towards the Fault Diagnosis in Any Arbitrarily Connected Networks. | Bhaskar DasGupta, Sudip Dasgupta, Atal Chowdhury |
| 1997 | RECOMB | On the complexity and approximation of syntenic distance. | Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming Li, Z. Sweedyk |
| 1997 | SODA | On Distances between Phylogenetic Trees (Extended Abstract). | Bhaskar DasGupta, Xin He, Tao Jiang, Ming Li, John Tromp, Louxin Zhang |
| 1994 | COLT | On a Learnability Question Associated to Neural Networks with Continuous Activations (Extended Abstract). | Bhaskar DasGupta, Hava T. Siegelmann, Eduardo D. Sontag |