| 2023 | ACSAC | Prioritizing Remediation of Enterprise Hosts by Malware Execution Risk. | Andrew Chi, Blake Anderson, Michael K. Reiter |
| 2022 | AMIA | Yours, Mine, and Ours: Exploring When Your Data Becomes Health Data. | Amanda L. Purnell, Priya Joshi, Blake Anderson, Cole Zanetti, Helga E. Rippen |
| 2022 | RO-MAN | AugRE: Augmented Robot Environment to Facilitate Human-Robot Teaming and Communication. | Frank Regal, Christina Petlowany, Can Pehlivanturk, Corrie Van Sice, Chris Suarez, Blake Anderson, Mitch Pryor |
| 2020 | AMIA | Hekademeia: Sustainable Research Technology Infrastructure for Persistent Project Access Across Funding Gaps. | Blake Anderson, Blaine Reeder |
| 2019 | IMC | TLS Beyond the Browser: Combining End Host and Network Data to Understand Application Behavior. | Blake Anderson, David A. McGrew |
| 2017 | KDD | Machine Learning for Encrypted Malware Traffic Classification: Accounting for Noisy Labels and Non-Stationarity. | Blake Anderson, David A. McGrew |
| 2016 | AAAI | Discovering Human and Machine Readable Descriptions of Malware Families. | Blake Anderson, David A. McGrew, Subharthi Paul |
| 2016 | AAAI | Bayesian Networks with Prior Knowledge for Malware Phylogenetics. | Diane Oyen, Blake Anderson, Christine M. Anderson-Cook |
| 2016 | CCS | Identifying Encrypted Malware Traffic with Contextual Flow Data. | Blake Anderson, David A. McGrew |
| 2016 | ICNP | Enhanced telemetry for encrypted threat analytics. | David A. McGrew, Blake Anderson |
| 2014 | CCS | Automating Reverse Engineering with Machine Learning Techniques. | Blake Anderson, Curtis B. Storlie, Micah Yates, Aaron McPhall |
| 2014 | IDA | Malware Phylogenetics Based on the Multiview Graphical Lasso. | Blake Anderson, Terran Lane, Curtis Hash |
| 2013 | HealthCom | TeleMDID: Mobile technology applications for interactive diagnoses in teledermatology clinics. | Mirna Becevic, Blake Anderson, Jing Ginger Han, E. Rachel Mutrux, Lanis Hicks, Karen Edison, Chi-Ren Shyu |
| 2012 | AMIA | A Study of Dermatological Image Search, Archive, and Use Behaviors. | Jing Han, Xin Wang, Blake Anderson, Jonathan Dyer, Chi-Ren Shyu |
| 2012 | CCS | Improving malware classification: bridging the static/dynamic gap. | Blake Anderson, Curtis B. Storlie, Terran Lane |
| 2012 | HealthCom | Improving disease management through a mobile application for lymphedema patients. | Christine Shuyu Xu, Blake Anderson, Jane Armer, Chi-Ren Shyu |
| 2012 | ICDM | Multiple Kernel Learning Clustering with an Application to Malware. | Blake Anderson, Curtis B. Storlie, Terran Lane |
| 2011 | COMPSAC | Detecting Code Injection Attacks in Internet Explorer. | Blake Anderson, Daniel Quist, Terran Lane |
| 2011 | SIGIR | Why searchers switch: understanding and predicting engine switching rationales. | Qi Guo, Ryen W. White, Yunqiao Zhang, Blake Anderson, Susan T. Dumais |