| 2026 | ACL | MEDSYN: Benchmarking Multi-EviDence SYNthesis in Complex Clinical Cases for Multimodal Large Language Models. | Boqi Chen, Xudong Liu, Jiachuan Peng, Marianne Frey-Marti, Kyle Lam, Bang Zheng, Lin Li, Jianing Qiu |
| 2026 | EACL | Mask What Matters: Mitigating Object Hallucinations in Multimodal Large Language Models with Object-Aligned Visual Contrastive Decoding. | Boqi Chen, Xudong Liu, Jianing Qiu |
| 2026 | SANER | Grounding Generative AI in Software Engineering: Are We There Yet? | Mootez Saad, Jos Antonio Hernndez Lpez, Boqi Chen, Neil A. Ernst, Dniel Varr, Tushar Sharma |
| 2025 | COLING | Seeing Beyond: Enhancing Visual Question Answering with Multi-Modal Retrieval. | Boqi Chen, Anuj Khare, Gaurav Kumar, Arjun R. Akula, Pradyumna Narayana |
| 2025 | IROS | MIXPINN: Mixed-Material Simulations by Physics-Informed Neural Network. | Xintian Yuan, Yunke Ao, Boqi Chen, Philipp Frnstahl |
| 2025 | ICSE | Consistent Graph Model Generation with Large Language Models. | Boqi Chen |
| 2025 | ICSE | The Power of Types: Exploring the Impact of Type Checking on Neural Bug Detection in Dynamically Typed Languages. | Boqi Chen, Jos Antonio Hernndez Lpez, Gunter Mussbacher, Dniel Varr |
| 2025 | MICCAI | Revisiting Automatic Data Curation for Vision Foundation Models in Digital Pathology. | Boqi Chen, Cdric Vincent-Cuaz, Lydia A. Schoenpflug, Manuel Madeira, Lisa Fournier, Vaishnavi Subramanian, Sonali Andani, Samuel Ruiprez-Campillo, Julia E. Vogt, Raphalle Luisier, Dorina Thanou, Viktor H. Koelzer, Pascal Frossard, Gabriele Campanella, Gunnar Rtsch |
| 2025 | MODELS | MCeT: Behavioral Model Correctness Evaluation using Large Language Models. | Khaled E. Ahmed, Jialing Song, Boqi Chen, Ou Wei, Bingzhou Zheng |
| 2025 | MODELS | SHERPA: A Model-Driven Framework for Large Language Model Execution. | Boqi Chen, Kua Chene, Jos Antonio Hernndez Lpez, Gunter Mussbacher, Dniel Varr, Amir Feizpour |
| 2025 | MODELS | Accurate and Consistent Graph Model Generation from Text with Large Language Models. | Boqi Chen, Ou Wei, Bingzhou Zheng, Gunter Mussbacher |
| 2025 | RE | LLM-based Satisfiability Checking of String Requirements by Consistent Data and Checker Generation. | Boqi Chen, Aren A. Babikian, Shuzhao Feng, Dniel Varr, Gunter Mussbacher |
| 2025 | RE | MoDRE 2025: 15th International Model-Driven Requirements Engineering Workshop. | Ana Moreira, Gunter Mussbacher, Joo Arajo, Pablo Snchez, Boqi Chen |
| 2025 | WACV | Generalizable Single-Source Cross-Modality Medical Image Segmentation via Invariant Causal Mechanisms. | Boqi Chen, Yuanzhi Zhu, Yunke Ao, Sebastiano Caprara, Reto Sutter, Gunnar Rtsch, Ender Konukoglu, Anna Susmelj |
| 2024 | MICCAI | A Unified Model for Longitudinal Multi-Modal Multi-View Prediction with Missingness. | Boqi Chen, Junier Oliva, Marc Niethammer |
| 2024 | MODELS | Embedding-based Automated Assessment of Domain Models. | Kua Chen, Boqi Chen, Yujing Yang, Gunter Mussbacher, Dniel Varr |
| 2024 | MODELS | Multi-step Iterative Automated Domain Modeling with Large Language Models. | Yujing Yang, Boqi Chen, Kua Chen, Gunter Mussbacher, Dniel Varr |
| 2023 | MICCAI | MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities. | Boqi Chen, Marc Niethammer |
| 2023 | MODELS | Automated Domain Modeling with Large Language Models: A Comparative Study. | Kua Chen, Yujing Yang, Boqi Chen, Jos Antonio Hernndez Lpez, Gunter Mussbacher, Dniel Varr |
| 2023 | MODELS | Prompting or Fine-tuning? A Comparative Study of Large Language Models for Taxonomy Construction. | Boqi Chen, Fandi Yi, Dniel Varr |
| 2023 | RE | On the Use of GPT-4 for Creating Goal Models: An Exploratory Study. | Boqi Chen, Kua Chen, Shabnam Hassani, Yujing Yang, Daniel Amyot, Lysanne Lessard, Gunter Mussbacher, Mehrdad Sabetzadeh, Dniel Varr |
| 2022 | ECCV | Differentiable Zooming for Multiple Instance Learning on Whole-Slide Images. | Kevin Thandiackal, Boqi Chen, Pushpak Pati, Guillaume Jaume, Drew F. K. Williamson, Maria Gabrani, Orcun Goksel |
| 2021 | EMNLP | Detecting Frames in News Headlines and Lead Images in U.S. Gun Violence Coverage. | Isidora Chara Tourni, Lei Guo, Taufiq Husada Daryanto, Fabian Zhafransyah, Edward Edberg Halim, Mona Jalal, Boqi Chen, Sha Lai, Hengchang Hu, Margrit Betke, Prakash Ishwar, Derry Tanti Wijaya |
| 2020 | MODELS | Automated video game world map synthesis by model-based techniques. | Boqi Chen, Dylan Havelock, Connor Plante, Michael Sukkarieh, Oszkr Semerth, Dniel Varr |
| 2019 | KDD | Focused Context Balancing for Robust Offline Policy Evaluation. | Hao Zou, Kun Kuang, Boqi Chen, Peixuan Chen, Peng Cui |
| 2015 | ICIP | Reference image based method of region of interest enhancement for haze image. | Wuzhen Shi, Xinwei Gao, Boqi Chen, Feng Jiang, Debin Zhao |