| 2017 | SIGCSE | Practical Systems Programming in Computer Science Education (Abstract Only). | Peter H. Frhlich, Borja Sotomayor |
| 2016 | SIGCSE | A Programming Contest Strategy Guide. | Aaron Bloomfield, Borja Sotomayor |
| 2016 | SIGCSE | Increasing Programming Contest Participation for Fun and Profit (Abstract Only). | Aaron Bloomfield, Borja Sotomayor |
| 2016 | SIGCSE | chidb: Building a Simple Relational Database System from Scratch. | Borja Sotomayor, Adam Shaw |
| 2012 | SC | Deploying Bioinformatics Workflows on Clouds with Galaxy and Globus Provision. | Bo Liu, Borja Sotomayor, Ravi K. Madduri, Kyle Chard, Ian T. Foster |
| 2009 | HPCC | Resource Leasing and the Art of Suspending Virtual Machines. | Borja Sotomayor, Rubn S. Montero, Ignacio Martn Llorente, Ian T. Foster |
| 2008 | HPDC | Combining batch execution and leasing using virtual machines. | Borja Sotomayor, Kate Keahey, Ian T. Foster |
| 2006 | CCGRID | Virtual Clusters for Grid Communities. | Ian T. Foster, Timothy Freeman, Katarzyna Keahey, Doug Scheftner, Borja Sotomayor, Xuehai Zhang |
| 2006 | ICSOC | Division of Labor: Tools for Growing and Scaling Grids. | Timothy Freeman, Katarzyna Keahey, Ian T. Foster, Abhishek Rana, Borja Sotomayor, Frank Wrthwein |
| 2006 | SC | Overhead Matters: A Model for Virtual Resource Management. | Borja Sotomayor, Kate Keahey, Ian T. Foster |