| 2020 | WABI | A Graph-Theoretic Barcode Ordering Model for Linked-Reads. | Yoann Dufresne, Chen Sun, Pierre Marijon, Dominique Lavenier, Cdric Chauve, Rayan Chikhi |
| 2018 | RECOMB | Detecting Introgression in Anopheles Mosquito Genomes Using a Reconciliation-Based Approach. | Cdric Chauve, Jingxue Feng, Liangliang Wang |
| 2018 | RECOMB | The Rooted SCJ Median with Single Gene Duplications. | Aniket C. Mane, Manuel Lafond, Pedro Feijo, Cdric Chauve |
| 2018 | WABI | PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. | Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cdric Chauve, Leonid Chindelevitch |
| 2017 | RECOMB | A Tractable Variant of the Single Cut or Join Distance with Duplicated Genes. | Pedro Feijo, Aniket C. Mane, Cdric Chauve |
| 2017 | SPIRE | Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). | Cdric Chauve, Mark Jones, Manuel Lafond, Cline Scornavacca, Mathias Weller |
| 2016 | WABI | The Gene Family-Free Median of Three. | Daniel Doerr, Pedro Feijo, Metin Balaban, Cdric Chauve |
| 2015 | RECOMB | Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. | Andrew W. McPherson, Andrew Roth, Cdric Chauve, Sleyman Cenk Sahinalp |
| 2015 | SPIRE | Chaining Fragments in Sequences: to Sweep or Not (Extended Abstract). | Julien Allali, Cdric Chauve, Laetitia Bourgeade |
| 2014 | ECCB | Chaining Sequence/Structure Seeds for Computing RNA Similarity. | Laetitia Bourgeade, Julien Allali, Cdric Chauve |
| 2013 | IWOCA | Hypergraph Covering Problems Motivated by Genome Assembly Questions. | Cdric Chauve, Murray Patterson, Ashok Rajaraman |
| 2011 | CPM | Tractability Results for the Consecutive-Ones Property with Multiplicity. | Cdric Chauve, Jn Manuch, Murray Patterson, Roland Wittler |
| 2010 | CPM | Breakpoint Distance and PQ-Trees. | Haitao Jiang, Cdric Chauve, Binhai Zhu |
| 2010 | IWOCA | Efficient Chaining of Seeds in Ordered Trees. | Julien Allali, Cdric Chauve, Pascal Ferraro, Anne-Laure Gaillard |
| 2010 | RECOMB | An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model. | Ada Ouangraoua, Krister M. Swenson, Cdric Chauve |
| 2009 | CPM | Average-Case Analysis of Perfect Sorting by Reversals. | Mathilde Bouvel, Cdric Chauve, Marni Mishna, Dominique Rossin |
| 2009 | RECOMB | New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees. | Cdric Chauve, Nadia El-Mabrouk |
| 2009 | RECOMB | Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction. | Cdric Chauve, Utz-Uwe Haus, Tamon Stephen, Vivija P. You |
| 2008 | RECOMB | Perfect DCJ Rearrangement. | Sverine Brard, Annie Chateau, Cdric Chauve, Christophe Paul, Eric Tannier |
| 2008 | RECOMB | Algorithms for Exploring the Space of Gene Tree/Species Tree Reconciliations. | Jean-Philippe Doyon, Cdric Chauve, Sylvie Hamel |
| 2007 | APBC | Exploring Genome Rearrangements using Virtual Hybridization. | Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cdric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette |
| 2007 | RECOMB | Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract). | Cdric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk |
| 2006 | ICCS | Genomes Containing Duplicates Are Hard to Compare. | Cdric Chauve, Guillaume Fertin, Romeo Rizzi, Stphane Vialette |
| 2006 | RECOMB | Inferring Positional Homologs with Common Intervals of Sequences. | Guillaume Blin, Annie Chateau, Cdric Chauve, Yannick Gingras |
| 2005 | ESA | Computing Common Intervals of | Anne Bergeron, Cdric Chauve, Fabien de Montgolfier, Mathieu Raffinot |
| 2005 | RECOMB | Genes Order and Phylogenetic Reconstruction: Application to | Guillaume Blin, Cdric Chauve, Guillaume Fertin |
| 2005 | SPIRE | An Edit Distance Between RNA Stem-Loops. | Valentin Guignon, Cdric Chauve, Sylvie Hamel |
| 2005 | WABI | Perfect Sorting by Reversals Is Not Always Difficult. | Sverine Brard, Anne Bergeron, Cdric Chauve, Christophe Paul |
| 2004 | RECOMB | Conservation of Combinatorial Structures in Evolution Scenarios. | Sverine Brard, Anne Bergeron, Cdric Chauve |
| 2004 | WABI | Reconstructing Ancestral Gene Orders Using Conserved Intervals. | Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cdric Chauve |
| 2002 | SPIRE | Tree Pattern Matching for Linear Static Terms. | Cdric Chauve |