| 2014 | RECOMB | Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. | Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg |
| 2011 | DATE | When to stop verification?: Statistical trade-off between expected loss and simulation cost. | Sumit Kumar Jha, Christopher James Langmead, Swarup Mohalik, S. Ramesh |
| 2011 | ICML | Approximating Correlated Equilibria using Relaxations on the Marginal Polytope. | Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead |
| 2009 | ICML | A Bayesian approach to protein model quality assessment. | Hetunandan Kamisetty, Christopher James Langmead |
| 2009 | RECOMB | Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. | Alexandre Donz, Gilles Clermont, Axel Legay, Christopher James Langmead |
| 2009 | RECOMB | An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. | Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead |
| 2008 | APBC | Symbolic Approaches for Finding Control Strategies in Boolean Networks. | Christopher James Langmead, Sumit Kumar Jha |
| 2007 | RECOMB | Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. | Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead |
| 2007 | WABI | Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. | Christopher James Langmead, Sumit Kumar Jha |
| 2006 | APBC | Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. | K. Arun, Christopher James Langmead |
| 2006 | APBC | A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. | Christopher James Langmead |
| 2003 | RECOMB | Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. | Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald |
| 2002 | RECOMB | Phase-independent rhythmic analysis of genome-wide expression patterns. | Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald |
| 2001 | RECOMB | Extracting structural information using time-frequency analysis of protein NMR data. | Christopher James Langmead, Bruce Randall Donald |