| 2026 | PPoPP | Faster and Cheaper: Pushing the Sequence Alignment Throughput with Commercial CPUs. | Zhonghai Zhang, Yewen Li, Ke Meng, Chunming Zhang, Guangming Tan |
| 2025 | PPoPP | FastBWA: Practical and Cost-Efficient Genome Sequence Alignment Pipeline. | Zhonghai Zhang, Yewen Li, Ke Meng, Chunming Zhang, Guangming Tan |
| 2018 | IGARSS | Sea-Ice Image Classification for Channel Navigation in Polar Application. | Nan Su, Chunming Zhang, Yiming Yan, Chunhui Zhao, Zhichao Tan |
| 2017 | HPCC | Quantifying and Mitigating Computational Inefficiency of Genomics Data Analysis. | Xueqi Li, Guangming Tan, Chunming Zhang, Xu Li, Zhonghai Zhang, Ninghui Sun |
| 2014 | AISTATS | Learning Heterogeneous Hidden Markov Random Fields. | Jie Liu, Chunming Zhang, Elizabeth S. Burnside, David Page |
| 2014 | FPGA | Accelerating massive short reads mapping for next generation sequencing (abstract only). | Chunming Zhang, Wen Tang, Guangming Tan |
| 2014 | ICML | Multiple Testing under Dependence via Semiparametric Graphical Models. | Jie Liu, Chunming Zhang, Elizabeth S. Burnside, David Page |
| 2012 | FCCM | Accelerating Millions of Short Reads Mapping on a Heterogeneous Architecture with FPGA Accelerator. | Wen Tang, Wendi Wang, Bo Duan, Chunming Zhang, Guangming Tan, Peiheng Zhang, Ninghui Sun |
| 2012 | FPGA | A coarse-grained stream architecture for cryo-electron microscopy images 3D reconstruction. | Wendi Wang, Bo Duan, Wen Tang, Chunming Zhang, Guangming Tan, Peiheng Zhang, Ninghui Sun |
| 2012 | UAI | Graphical-model Based Multiple Testing under Dependence, with Applications to Genome-wide Association Studies. | Jie Liu, Chunming Zhang, Catherine A. McCarty, Peggy L. Peissig, Elizabeth S. Burnside, David Page |