| 2019 | RECOMB | Fast Approximation of Frequent k-mers and Applications to Metagenomics. | Leonardo Pellegrina, Cinzia Pizzi, Fabio Vandin |
| 2017 | CIBCB | Binning metagenomic reads with probabilistic sequence signatures based on spaced seeds. | Samuele Girotto, Matteo Comin, Cinzia Pizzi |
| 2017 | ICWSM | How User Condition Affects Community Dynamics in a Forum on Autism. | Mattia Samory, Cinzia Pizzi, Enoch Peserico |
| 2017 | UIC | Consensus-based anomaly detection for efficient heating management. | Francesco Carbone, Angelo Cenedese, Cinzia Pizzi |
| 2017 | WABI | Fast Spaced Seed Hashing. | Samuele Girotto, Matteo Comin, Cinzia Pizzi |
| 2015 | WABI | A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches. | Cinzia Pizzi |
| 2014 | DCC | Alignment Free Sequence Similarity with Bounded Hamming Distance. | Alberto Apostolico, Concettina Guerra, Cinzia Pizzi |
| 2014 | WABI | Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2012 | SPIRE | Characterization and Extraction of Irredundant Tandem Motifs. | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2009 | SPIRE | Expectation of Strings with Mismatches under Markov Chain Distribution. | Cinzia Pizzi, Mauro Bianco |
| 2004 | DIS | Optimal Discovery of Subword Associations in Strings. | Alberto Apostolico, Cinzia Pizzi, Giorgio Satta |
| 2004 | WABI | Monotone Scoring of Patterns with Mismatches: (Extended Abstract). | Alberto Apostolico, Cinzia Pizzi |