| 2014 | CEC | GAMI-CRM: Using de novo motif inference to detect cis-regulatory modules. | Jeffrey A. Thompson, Clare Bates Congdon |
| 2013 | CIBCB | An exploration into improving DNA motif inference by looking for highly conserved core regions. | Jeffrey A. Thompson, Clare Bates Congdon |
| 2012 | CEC | Preliminary results for GAMMI: Genetic algorithms for motif-module inference. | David J. Gagne, Clare Bates Congdon |
| 2009 | CEC | RAMP: A rule-based agent for Ms. Pac-Man. | Alan Fitzgerald, Clare Bates Congdon |
| 2009 | CEC | Agent Smith: Towards an evolutionary rule-based agent for interactive dynamic games. | Ryan K. Small, Clare Bates Congdon |
| 2007 | CEC | Preliminary results with GAUGUIN, an evolutionary computation approach to creating art in the suprematis style. | Thomas Cook, Clare Bates Congdon |
| 2007 | CEC | Initial results with EpiSwarm, a Swarm-based system investigating genetic epistasis. | Thomas Goth, Chia-Ti Tsai, Fu-Tien Chiang, Clare Bates Congdon |
| 2005 | AMIA | Estimating Patient's Length of Stay in the Emergency Department with an Artificial Neural Network. | Jesse O. Wrenn, Ian Jones, Kevin Lanaghan, Clare Bates Congdon, Dominik Aronsky |
| 2005 | CEC | GENCEM: a genetic algorithms approach to coordinated exploration and mapping with multiple autonomous robots. | Christopher C. Sotzing, Win Mar Htay, Clare Bates Congdon |
| 2005 | CIBCB | Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference. | Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly |
| 2005 | GECCO | RCS: a learning classifier system for evolutionary robotics. | Noah W. Smith, Clare Bates Congdon |
| 2003 | CEC | Phylogenetic trees using evolutionary search: initial progress in extending Gaphyl to work with genetic data. | Clare Bates Congdon, Kevin J. Septor |
| 2003 | GECCO | GenTree: An Interactive Genetic Algorithms System for Designing 3D Polygonal Tree Models. | Clare Bates Congdon, Raymond H. Mazza |
| 2002 | CEC | Towards a genetic algorithms approach to designing 3D polygonal tree models. | Raymond H. Mazza, Clare Bates Congdon |
| 2002 | GECCO | Gaphyl: An Evolutionary Algorithms Approach For The Study Of Natural Evolution. | Clare Bates Congdon |
| 2001 | SIGCSE | The use of robots in the undergraduate curriculum: experience reports. | Michael Goldweber, Clare Bates Congdon, Barry S. Fagin, Deborah J. Hwang, Frank Klassner |
| 2000 | CEC | Classification of epidemiological data: a comparison of genetic algorithm and decision tree approaches. | Clare Bates Congdon |
| 2000 | SIGCSE | Machine learning in the liberal arts curriculum. | Clare Bates Congdon |
| 2000 | SIGCSE | Teaching advice and support for new and adjunct faculty (panel session): experiences, policies, and strategies. | David G. Kay, Clare Bates Congdon, Sue Fitzgerald, Merle S. King, Pat Semmes |
| 1993 | AAAI | Winning the AAAI Robot Competition. | David Kortenkamp, Marcus J. Huber, Charles J. Cohen, Ulrich Raschke, Clint Bidlack, Clare Bates Congdon, Frank Koss, Terry E. Weymouth |