| 2025 | WABI | Average-Tree Phylogenetic Diversity of Networks. | Leo van Iersel, Mark Jones, Jannik Schestag, Cline Scornavacca, Mathias Weller |
| 2021 | WABI | Treewidth-Based Algorithms for the Small Parsimony Problem on Networks. | Cline Scornavacca, Mathias Weller |
| 2020 | SOFSEM | Scanning Phylogenetic Networks Is NP-hard. | Vincent Berry, Cline Scornavacca, Mathias Weller |
| 2018 | WABI | Reconciling Multiple Genes Trees via Segmental Duplications and Losses. | Riccardo Dondi, Manuel Lafond, Cline Scornavacca |
| 2017 | CPM | On the Weighted Quartet Consensus Problem. | Manuel Lafond, Cline Scornavacca |
| 2017 | SPIRE | Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). | Cdric Chauve, Mark Jones, Manuel Lafond, Cline Scornavacca, Mathias Weller |
| 2016 | AAIM | Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees. | Julien Baste, Christophe Paul, Ignasi Sau, Cline Scornavacca |
| 2012 | WABI | A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. | Leo van Iersel, Steven Kelk, Nela Lekic, Cline Scornavacca |
| 2010 | RECOMB | An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. | Jean-Philippe Doyon, Cline Scornavacca, Konstantin Yu. Gorbunov, Gergely J. Szllosi, Vincent Ranwez, Vincent Berry |
| 2009 | LATA | From Gene Trees to Species Trees through a Supertree Approach. | Cline Scornavacca, Vincent Berry, Vincent Ranwez |