| 2026 | COCOON | A Faster Algorithm for Sorting by Reciprocal Translocations. | Xin Tong, Haitao Jiang, Tiantian Li, Lianrong Pu, Binhai Zhu, Daming Zhu |
| 2025 | COCOON | Improved Approximation Algorithm and Hardness Result for Sorting Unsigned Strings by Symmetric Reversals. | Wenfeng Lai, Haitao Jiang, Daming Zhu, Binhai Zhu |
| 2025 | COCOON | Longest Double-Bounded (k]-Tuple Common Substrings. | Tiantian Li, Siqi Jiang, Haitao Jiang, Daming Zhu |
| 2025 | COCOON | A Randomized FPT Approximation Algorithm for Sorting Unsigned Genomes by Translocations: Breaking the 1.375 Approximation Barrier. | Chengcheng Sun, Haitao Jiang, Guojun Li, Daming Zhu |
| 2025 | FAW | Finding a Set of Long Common Substrings with Repeats from m Input Strings. | Tiantian Li, Lusheng Wang, Daming Zhu |
| 2024 | COCOON | On Sorting by Unsigned Symmetric Reversals. | Wenfeng Lai, Haitao Jiang, Daming Zhu, Binhai Zhu |
| 2024 | COCOON | Can the 1.375 Approximation Ratio of Unsigned Genomes Distances be Improved? | Chengcheng Sun, Haitao Jiang, Lusheng Wang, Daming Zhu |
| 2024 | COCOON | On Sorting Signed Permutations by Flanked DCJs. | Xin Tong, Haitao Jiang, Daming Zhu, Lianrong Pu |
| 2024 | FAW | Longest (k]-Tuple Common Substrings. | Tiantian Li, Haitao Jiang, Lusheng Wang, Daming Zhu |
| 2023 | COCOON | Cabbage Can't Always Be Transformed into Turnip: Decision Algorithms for Sorting by Symmetric Reversals. | Xin Tong, Yixiao Yu, Ziyi Fang, Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu |
| 2019 | COCOON | An Approximation Algorithm for Sorting by Bounded Singleton Moves. | Shengjun Xie, Haodi Feng, Haitao Jiang, Junfeng Luan, Daming Zhu |
| 2019 | CPM | A 2-Approximation Algorithm for the Complementary Maximal Strip Recovery Problem. | Haitao Jiang, Jiong Guo, Daming Zhu, Binhai Zhu |
| 2018 | CPM | Can a permutation be sorted by best short swaps?. | Shu Zhang, Daming Zhu, Haitao Jiang, Jingjing Ma, Jiong Guo, Haodi Feng |
| 2017 | COCOA | A New Approximation Algorithm for the Maximum Stacking Base Pairs Problem from RNA Secondary Structures Prediction. | Aizhong Zhou, Haitao Jiang, Jiong Guo, Daming Zhu |
| 2017 | FAW | A 1.4-Approximation Algorithm for Two-Sided Scaffold Filling. | Jingjing Ma, Haitao Jiang, Daming Zhu, Shu Zhang |
| 2016 | CPM | Genomic Scaffold Filling Revisited. | Haitao Jiang, Chenglin Fan, Boting Yang, Farong Zhong, Daming Zhu, Binhai Zhu |
| 2016 | WABI | A New Approximation Algorithm for Unsigned Translocation Sorting. | Lianrong Pu, Daming Zhu, Haitao Jiang |
| 2015 | CIS | Predicting Algorithm of RNA Folding Structure with Pseudoknots. | Zhendong Liu, Daming Zhu, Qionghai Dai |
| 2015 | COCOON | Approximation and Nonapproximability for the One-Sided Scaffold Filling Problem. | Haitao Jiang, Jingjing Ma, Junfeng Luan, Daming Zhu |
| 2015 | FAW | A New Algorithm for Intermediate Dataset Storage in a Cloud-Based Dataflow. | Jie Cheng, Daming Zhu, Binhai Zhu |
| 2015 | FAW | Local Search to Approximate Max NAE- k k -Sat Tightly. | Aiyong Xian, Kaiyuan Zhu, Daming Zhu, Lianrong Pu |
| 2014 | FAW | A (1.408+ε)-Approximation Algorithm for Sorting Unsigned Genomes by Reciprocal Translocations. | Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu |
| 2014 | ISAAC | An 5/4-Approximation Algorithm for Sorting Permutations by Short Block Moves. | Haitao Jiang, Haodi Feng, Daming Zhu |
| 2014 | ISAAC | Approximating the Maximum Internal Spanning Tree Problem via a Maximum Path-Cycle Cover. | Xingfu Li, Daming Zhu |
| 2013 | CIS | An Approximation Scheme for RNA Folding Structure Prediction Including Pseudoknots. | Zhendong Liu, Daming Zhu, Wei Cui, Nan Liu |
| 2013 | COCOON | An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies. | Nan Liu, Haitao Jiang, Daming Zhu, Binhai Zhu |
| 2013 | TAMC | The Algorithm for the Two-Sided Scaffold Filling Problem. | Nan Liu, Daming Zhu |
| 2012 | AAIM | On Editing Graphs into 2-Club Clusters. | Hong Liu, Peng Zhang, Daming Zhu |
| 2011 | CIS | New Heuristic Algorithm of RNA Secondary Structure Prediction with Pseudoknots. | Zhendong Liu, Zhijun Zhang, Zaixue Liu, Daming Zhu |
| 2011 | COCOON | Tight Bounds on Local Search to Approximate the Maximum Satisfiability Problems. | Daming Zhu, Shaohan Ma, Pingping Zhang |
| 2010 | FAW | Minimum Common String Partition Revisited. | Haitao Jiang, Binhai Zhu, Daming Zhu, Hong Zhu |
| 2009 | TAMC | Polynomial-Time Algorithm for Sorting by Generalized Translocations. | Xiao Yin, Daming Zhu |
| 2008 | COCOON | A 2.25-Approximation Algorithm for Cut-and-Paste Sorting of Unsigned Circular Permutations. | Xiaowen Lou, Daming Zhu |
| 2008 | ICNC | New Evolutionary Subset: Application to Symbiotic Evolutionary Algorithm for Job-Shop Scheduling Problem. | Zhaofeng Su, Hongze Qiu, Daming Zhu, Haodi Feng |
| 2008 | TAMC | Genome Rearrangement Algorithms for Unsigned Permutations with O(logn) Singletons. | Xiaowen Lou, Daming Zhu |
| 2007 | ADMA | Prediction of Protein Subcellular Locations by Combining K-Local Hyperplane Distance Nearest Neighbor. | Hong Liu, Haodi Feng, Daming Zhu |
| 2006 | CEC | DNA Encoding Method of Weight for Chinese Postman Problem. | Aili Han, Daming Zhu |
| 2006 | ISDA | Complexity Analysis for the HEWN Algorithm. | Aili Han, Daming Zhu |
| 2006 | SYNASC | DNA Computing Model for the Minimum Spanning Tree Problem. | Aili Han, Daming Zhu |
| 2006 | TAMC | Faster Algorithms for Sorting by Transpositions and Sorting by Block-Interchanges. | Jianxing Feng, Daming Zhu |
| 2005 | APBC | An O(N | Lusheng Wang, Daming Zhu, Xiaowen Liu, Shaohan Ma |
| 2005 | COCOON | A New Pseudoknots Folding Algorithm for RNA Structure Prediction. | Hengwu Li, Daming Zhu |
| 2005 | ISAAC | A 1.75-Approximation Algorithm for Unsigned Translocation Distance. | Yun Cui, Lusheng Wang, Daming Zhu |
| 1994 | ISAAC | Analysis of the Convergency of Topology Preserving Neural Networks on Learning. | Daming Zhu, Shaohan Ma, Hongze Qiu |