| 2026 | DLT | The Four Corners Problem Over Larger Alphabets. | Daniel Prusa, Michael Wehar, Chen Xu |
| 2026 | FUN | Finding Maximum and Minimum Size Matrices: The Algorithmic Complexity of Coding Challenges. | Abdelrahman Abdelmonsef, Xingyu Dong, Daniel Prusa, Michael Wehar, Chen Xu |
| 2024 | ECCV | SCOD: From Heuristics to Theory. | Vojtech Franc, Jakub Paplhm, Daniel Prusa |
| 2020 | CVPR | Relative Interior Rule in Block-Coordinate Descent. | Toms Werner, Daniel Prusa, Toms Dlask |
| 2020 | DLT | Complexity of Searching for 2 by 2 Submatrices in Boolean Matrices. | Daniel Prusa, Michael Wehar |
| 2019 | ICML | On discriminative learning of prediction uncertainty. | Vojtech Franc, Daniel Prusa |
| 2018 | DLT | Two-Way Automata and One-Tape Machines - Read Only Versus Linear Time. | Bruno Guillon, Giovanni Pighizzini, Luca Prigioniero, Daniel Prusa |
| 2018 | DLT | Dynamics of the Independence Number and Automata Synchronization. | Vladimir V. Gusev, Raphal M. Jungers, Daniel Prusa |
| 2017 | ICDAR | Rank-Reducing Two-Dimensional Grammars for Document Layout Analysis. | Daniel Prusa, Akio Fujiyoshi |
| 2017 | IWCIA | Template-Based Pattern Matching in Two-Dimensional Arrays. | Yo-Sub Han, Daniel Prusa |
| 2017 | SODA | LP Relaxations of Some NP-Hard Problems Are as Hard as Any LP. | Daniel Prusa, Toms Werner |
| 2016 | ICFHR | Recognizing Off-Line Flowcharts by Reconstructing Strokes and Using On-Line Recognition Techniques. | Martin Bresler, Daniel Prusa, Vclav Hlavc |
| 2015 | CVPR | Graph-based simplex method for pairwise energy minimization with binary variables. | Daniel Prusa |
| 2015 | WACV | Detection of Arrows in On-Line Sketched Diagrams Using Relative Stroke Positioning. | Martin Bresler, Daniel Prusa, Vclav Hlavc |
| 2014 | ICFHR | Recognition System for On-Line Sketched Diagrams. | Martin Bresler, Truyen Van Phan, Daniel Prusa, Masaki Nakagawa, Vclav Hlavc |
| 2014 | IROS | Garment perception and its folding using a dual-arm robot. | Jan Stria, Daniel Prusa, Vclav Hlavc, Libor Wagner, Vladimr Petrk, Pavel Krsek, Vladimr Smutn |
| 2014 | LATA | Weight-Reducing Hennie Machines and Their Descriptional Complexity. | Daniel Prusa |
| 2013 | CVPR | Universality of the Local Marginal Polytope. | Daniel Prusa, Toms Werner |
| 2013 | DLT | New Results on Deterministic Sgraffito Automata. | Daniel Prusa, Frantisek Mrz, Friedrich Otto |
| 2013 | ICDAR | Modeling Flowchart Structure Recognition as a Max-Sum Problem. | Martin Bresler, Daniel Prusa, Vclav Hlavc |
| 2012 | DLT | Two-Dimensional Sgraffito Automata. | Daniel Prusa, Frantisek Mrz |
| 2012 | ICFHR | MfrDB: Database of Annotated On-Line Mathematical Formulae. | Jan Stria, Martin Bresler, Daniel Prusa, Vclav Hlavc |
| 2008 | CIARP | Structural Construction for On-Line Mathematical Formulae Recognition. | Daniel Prusa, Vclav Hlavc |
| 2008 | PEPM | Generic framework for integration of programming languages into netbeans ide. | Jan Jancura, Daniel Prusa |
| 2007 | ICDAR | Mathematical Formulae Recognition Using 2D Grammars. | Daniel Prusa, Vclav Hlavc |