| 2020 | GECCO | Using evolutionary algorithms and pareto ranking to identify secure virtual local area networks. | Alina Pacheco Rodrguez, Errin W. Fulp, David J. John, Jinku Cui |
| 2015 | GLOBECOM | An Evolutionary Strategy for Resilient Cyber Defense. | Errin W. Fulp, H. Donald Gage, David J. John, Matthew R. McNiece, William H. Turkett Jr., Xin Zhou |
| 2014 | GECCO | Evolutionary based moving target cyber defense. | David J. John, Robert W. Smith, William H. Turkett Jr., Daniel A. Caas, Errin W. Fulp |
| 2010 | BIBE | Comparison of Co-temporal Modeling Algorithms on Sparse Experimental Time Series Data Sets. | Edward E. Allen, James L. Norris, David J. John, Stan J. Thomas, William H. Turkett Jr., Jacquelyn S. Fetrow |
| 2007 | BIBE | Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information Scores. | David J. John, Jacquelyn S. Fetrow, James L. Norris |
| 2006 | SIGCSE | Bioinformatics and computing curriculum: a new model for interdisciplinary courses. | Jacquelyn S. Fetrow, David J. John |
| 2002 | GECCO | Co-evolution With The Bierwirth-Mattfeld Hybrid Scheduler. | David J. John |
| 1994 | SIGCSE | NSF supported projects: parallel computation as an integrated component in the undergraduate curriculum in computer science. | David J. John |