| 2025 | WABI | Identifying Breakpoint Median Genomes: A Branching Algorithm Approach. | Poly H. da Silva, Arash Jamshidpey, David Sankoff |
| 2018 | COCOON | A Randomized FPT Approximation Algorithm for Maximum Alternating-Cycle Decomposition with Applications. | Haitao Jiang, Lianrong Pu, Letu Qingge, David Sankoff, Binhai Zhu |
| 2018 | RECOMB | Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae. | Yue Zhang, Chunfang Zheng, David Sankoff |
| 2017 | RECOMB | The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation. | Yue Zhang, David Sankoff |
| 2015 | IV | Literature Visualization and Similarity Measurement Based on Citation Relations. | Hanadi Alfraidi, Won-Sook Lee, David Sankoff |
| 2015 | WABI | Graph-Theoretic Modelling of the Domain Chaining Problem. | Poly H. da Silva, Simone Dantas, Chunfang Zheng, David Sankoff |
| 2012 | RECOMB | A Model for Biased Fractionation after Whole Genome Duplication. | David Sankoff, Chunfang Zheng, Baoyong Wang |
| 2011 | WABI | OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations. | Chunfang Zheng, Krister M. Swenson, Eric Lyons, David Sankoff |
| 2010 | PSB | Session Introduction. | Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff |
| 2010 | RECOMB | Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives. | Ghada Badr, Krister M. Swenson, David Sankoff |
| 2010 | RECOMB | Scaffold Filling under the Breakpoint Distance. | Haitao Jiang, Chunfang Zheng, David Sankoff, Binhai Zhu |
| 2010 | RECOMB | Genome Aliquoting Revisited. | Robert Warren, David Sankoff |
| 2010 | WABI | Listing All Sorting Reversals in Quadratic Time. | Krister M. Swenson, Ghada Badr, David Sankoff |
| 2009 | PSB | Session Introduction. | Bernard M. E. Moret, Webb Miller, Pavel A. Pevzner, David Sankoff |
| 2009 | RECOMB | A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances. | Zaky Adam, David Sankoff |
| 2009 | RECOMB | Natural Parameter Values for Generalized Gene Adjacency. | Zhenyu Yang, David Sankoff |
| 2008 | APBC | Genome Halving with Double Cut and Join. | Robert Warren, David Sankoff |
| 2008 | ECCB | Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. | Andrew Wei Xu, Benot Alain, David Sankoff |
| 2008 | ISMB | Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. | Chunfang Zheng, Qian Zhu, Zaky Adam, David Sankoff |
| 2008 | RECOMB | Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm Phylogeny. | David Sankoff, Chunfang Zheng, P. Kerr Wall, Claude W. dePamphilis, James H. Leebens-Mack, Victor A. Albert |
| 2008 | WABI | Multichromosomal Genome Median and Halving Problems. | Eric Tannier, Chunfang Zheng, David Sankoff |
| 2008 | WABI | Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem. | Andrew Wei Xu, David Sankoff |
| 2007 | APBC | Preface. | David Sankoff, Lusheng Wang, Francis Y. L. Chin |
| 2007 | ISMB | Polyploids, genome halving and phylogeny. | David Sankoff, Chunfang Zheng, Qian Zhu |
| 2007 | RECOMB | Parts of the Problem of Polyploids in Rearrangement Phylogeny. | Chunfang Zheng, Qian Zhu, David Sankoff |
| 2007 | WABI | Algorithms for the Extraction of Synteny Blocks from Comparative Maps. | Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff |
| 2006 | ICCS | Rearrangement of Noisy Genomes. | Chunfang Zheng, David Sankoff |
| 2006 | RECOMB | Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution. | Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff |
| 2006 | RECOMB | Statistical Evaluation of Genome Rearrangement. | David Sankoff |
| 2006 | RECOMB | Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes. | Andrew Wei Xu, Chunfang Zheng, David Sankoff |
| 2005 | COCOON | Genome Rearrangements with Partially Ordered Chromosomes. | Chunfang Zheng, David Sankoff |
| 2005 | ISMB | Reversal distance for partially ordered genomes. | Chunfang Zheng, Aleksander Lenert, David Sankoff |
| 2005 | RECOMB | Power Boosts for Cluster Tests. | David Sankoff, Lani Haque |
| 2005 | RECOMB | Stability of Rearrangement Measures in the Comparison of Genome Sequences. | David Sankoff, Matthew Mazowita |
| 2005 | RECOMB | Reversals of Fortune. | David Sankoff, Chunfang Zheng, Aleksander Lenert |
| 2004 | ISMB | Genomic features in the breakpoint regions between syntenic blocks. | Phil Trinh, Aoife McLysaght, David Sankoff |
| 2004 | RECOMB | The Statistical Significance of Max-Gap Clusters. | Rose Hoberman, David Sankoff, Dannie Durand |
| 2004 | RECOMB | The Distribution of Inversion Lengths in Bacteria. | David Sankoff, Jean-Franois Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk |
| 2004 | RECOMB | Estimators of Translocations and Inversions in Comparative Maps. | David Sankoff, Matthew Mazowita |
| 2004 | RECOMB | Chromosomal breakpoint re-use in the inference of genome sequence rearrangement. | David Sankoff, Phil Trinh |
| 2003 | ISMB | Detection and validation of single gene inversions. | Jean-Franois Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff |
| 2002 | RECOMB | Tests for gene clustering. | Dannie Durand, David Sankoff |
| 2002 | SAC | Short inversions and conserved gene clusters. | David Sankoff |
| 2000 | RECOMB | Early eukaryote evolution based on mitochondrial gene order breakpoints. | David Sankoff, David Bryant, Mlanie Deneault, B. Franz Lang, Gertraud Burger |
| 1999 | CPM | Hybridization and Genome Rearrangement. | Nadia El-Mabrouk, David Sankoff |
| 1999 | RECOMB | Reconstructing the pre-doubling genome. | Nadia El-Mabrouk, David Bryant, David Sankoff |
| 1999 | RECOMB | Probability models for genome rearrangement and linear invariants for phylogenetic inference. | David Sankoff, Mathieu Blanchette |
| 1999 | WADS | Generating 3D Virtual Populations from Pictures of a Few Individuals. | Won-Sook Lee, Pierre Beylot, David Sankoff, Nadia Magnenat-Thalmann |
| 1998 | ACL | The Production of Code-Mixed Discourse. | David Sankoff |
| 1998 | CPM | Genome Halving. | Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff |
| 1998 | RECOMB | Multiple genome rearrangements. | David Sankoff, Mathieu Blanchette |
| 1997 | COCOON | The Median Problem for Breakpoints in Comparative Genomics. | David Sankoff, Mathieu Blanchette |
| 1997 | CPM | On the Nadeau-Taylor Theory of Conserved Chromosome Segments. | David Sankoff, Marie-Noelle Parent, Isabelle Marchand, Vincent Ferretti |
| 1997 | RECOMB | Conserved segment identification. | David Sankoff, Vincent Ferretti, Joseph H. Nadeau |
| 1996 | CPM | Original Synteny. | Vincent Ferretti, Joseph H. Nadeau, David Sankoff |
| 1994 | CPM | Efficient Bounds for Oriented Chromosome Inversion Distance. | John D. Kececioglu, David Sankoff |
| 1993 | CPM | Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. | John D. Kececioglu, David Sankoff |
| 1992 | CPM | Edit Distances for Genome Comparisons Based on Non-Local Operations. | David Sankoff |
| 1969 | COLING | Simulation of Word-Meaning Stochastic Processes. | David Sankoff |