| 2026 | WABI | Contig Model for Variable-Order de Bruijn Graphs. | Diego Daz-Domnguez, Pierfrancesco Martinello, Taku Onodera, Simon J. Puglisi, Leena Salmela |
| 2025 | SPIRE | Prefix-Free Parsing for Merging Big BWTs. | Diego Daz-Domnguez, Travis Gagie, Veronica Guerrini, Ben Langmead, Zsuzsanna Liptk, Giovanni Manzini, Francesco Masillo, Vikram Shivakumar |
| 2023 | SPIRE | Computing All-vs-All MEMs in Grammar-Compressed Text. | Diego Daz-Domnguez, Leena Salmela |
| 2022 | CPM | Efficient Construction of the BWT for Repetitive Text Using String Compression. | Diego Daz-Domnguez, Gonzalo Navarro |
| 2022 | SPIRE | Computing All-vs-All MEMs in Run-Length-Encoded Collections of HiFi Reads. | Diego Daz-Domnguez, Simon J. Puglisi, Leena Salmela |
| 2021 | DCC | A grammar compressor for collections of reads with applications to the construction of the BWT. | Diego Daz-Domnguez, Gonzalo Navarro |
| 2021 | SPIRE | An LMS-Based Grammar Self-index with Local Consistency Properties. | Diego Daz-Domnguez, Gonzalo Navarro, Alejandro Pacheco |
| 2019 | CPM | Simulating the DNA Overlap Graph in Succinct Space. | Diego Daz-Domnguez, Travis Gagie, Gonzalo Navarro |
| 2019 | SPIRE | An Index for Sequencing Reads Based on the Colored de Bruijn Graph. | Diego Daz-Domnguez |