| 2025 | DCC | AIDetx: A Compression-Based Method for Identification of Machine-Learning Generated Text. | Leonardo Almeida, Pedro Rodrigues, Diogo Magalhes, Armando J. Pinho, Diogo Pratas |
| 2025 | DCC | Optimization of Data Compression Parameters Using Genetic Algorithms. | Armando J. Pinho, Diogo Pratas |
| 2025 | IBPRIA | ECOmpress: A Web Tool for Boosting Energy Efficiency Through Data Compression. | Dinis Lei, Denis Yamunaque, Armando J. Pinho, Diogo Pratas |
| 2025 | IBPRIA | A Machine Learning Method for Authentication of Human Ancient Mitochondrial DNA. | Denis Yamunaque, Armando J. Pinho, Antti Sajantila, Diogo Pratas |
| 2024 | DCC | Copy models for protein sequence compression. | Armando J. Pinho, Diogo Pratas |
| 2024 | DCC | An experimental sorting method for improving metagenomic data encoding. | Diogo Pratas, Armando J. Pinho |
| 2023 | DCC | JARVIS2: a data compressor for large genome sequences. | Diogo Pratas, Armando J. Pinho |
| 2022 | IBPRIA | Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods. | Jorge Miguel Silva, Diogo Pratas, Tnia Caetano, Srgio Matos |
| 2019 | PACBB | Visualization of Similar Primer and Adapter Sequences in Assembled Archaeal Genomes. | Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho |
| 2019 | PACBB | GeCo2: An Optimized Tool for Lossless Compression and Analysis of DNA Sequences. | Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho |
| 2018 | ACIVS | An Application of Data Compression Models to Handwritten Digit Classification. | Armando J. Pinho, Diogo Pratas |
| 2018 | PACBB | NET-ASAR: A Tool for DNA Sequence Search Based on Data Compression. | Manuel Gaspar, Diogo Pratas, Armando J. Pinho |
| 2018 | PACBB | Compression of Amino Acid Sequences. | Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho |
| 2018 | PACBB | A DNA Sequence Corpus for Compression Benchmark. | Diogo Pratas, Armando J. Pinho |
| 2017 | IBPRIA | Visualization of Distinct DNA Regions of the Modern Human Relatively to a Neanderthal Genome. | Diogo Pratas, Seyed Morteza Hosseini, Raquel M. Silva, Armando J. Pinho, Paulo Jorge S. G. Ferreira |
| 2017 | IBPRIA | On the Approximation of the Kolmogorov Complexity for DNA Sequences. | Diogo Pratas, Armando J. Pinho |
| 2017 | PACBB | On the Role of Inverted Repeats in DNA Sequence Similarity. | Seyed Morteza Hosseini, Diogo Pratas, Armando J. Pinho |
| 2017 | PACBB | Substitutional Tolerant Markov Models for Relative Compression of DNA Sequences. | Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho |
| 2017 | PACBB | Cryfa: A Tool to Compact and Encrypt FASTA Files. | Diogo Pratas, Seyed Morteza Hosseini, Armando J. Pinho |
| 2016 | DCC | Authorship Attribution Using Relative Compression. | Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira |
| 2016 | DCC | Efficient Compression of Genomic Sequences. | Diogo Pratas, Armando J. Pinho, Paulo Jorge S. G. Ferreira |
| 2014 | DCC | Information Profiles for DNA Pattern Discovery. | Armando J. Pinho, Diogo Pratas, Paulo Jorge S. G. Ferreira |
| 2014 | DCC | A Conditional Compression Distance that Unveils Insights of the Genomic Evolution. | Diogo Pratas, Armando J. Pinho |
| 2012 | PACBB | Exon: A Web-Based Software Toolkit for DNA Sequence Analysis. | Diogo Pratas, Armando J. Pinho, Sara P. Garcia |
| 2011 | PACBB | Compressing the Human Genome Using Exclusively Markov Models. | Diogo Pratas, Armando J. Pinho |