| 2023 | Identifying Heat-Resilient Corals Using Machine Learning and Microbiome. | Hyerim Yong, Mai Oudah |
| 2023 | Machine Learning Based Screening Tool for Alzheimer's Disease via Gut Microbiome. | Pedro Velasquez, Mai Oudah |
| 2023 | A New GIMME-Based Heuristic for Compartmentalised Transcriptomics Data Integration. | Diego Troitio-Jordedo, Lucas Carvalho, David Henriques, Vtor Pereira, Miguel Rocha, Eva Balsa-Canto |
| 2023 | Analysis of the Confidence in the Prediction of the Protein Folding by Artificial Intelligence. | Paloma Tejera-Nevado, Emilio Serrano, Ana Gonzlez-Herrero, Rodrigo Bermejo-Moreno, Alejandro Rodrguez Gonzlez |
| 2023 | Feature Selection Methods Comparison: Logistic Regression-Based Algorithm and Neural Network Tools. | Katarzyna Sieradzka, Joanna Polanska |
| 2023 | The Impact of Schizophrenia Misdiagnosis Rates on Machine Learning Models Performance. | Daniel Martins, Conceio Egas, Joel P. Arrais |
| 2023 | Deep Learning and Transformers in MHC-Peptide Binding and Presentation Towards Personalized Vaccines in Cancer Immunology: A Brief Review. | Vicente Enrique Machaca Arceda, Valeria Goyzueta, Maria Cruz, Yvn Tpac |
| 2023 | Auto-phylo: A Pipeline Maker for Phylogenetic Studies. | Hugo Lpez-Fernndez, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira |
| 2023 | Progressive Multiple Sequence Alignment for COVID-19 Mutation Identification via Deep Reinforcement Learning. | Zanuba Hilla Qudrotu Chofsoh, Imam Mukhlash, Mohammad Iqbal, Bandung Arry Sanjoyo |
| 2023 | Neoantigen Detection Using Transformers and Transfer Learning in the Cancer Immunology Context. | Vicente Enrique Machaca Arceda |
| 2022 | The Covid-19 Decision Support System (C19DSS) - A Mobile App. | Pierpaolo Vittorini, Nicol Casano, Gaia Sinatti, Silvano Junior Santini, Clara Balsano |
| 2022 | EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species. | Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, Andr D. Sousa, Hugo Lpez-Fernndez, Cristina P. Vieira |
| 2022 | Towards a Flexible and Portable Workflow for Analyzing miRNA-Seq Neuropsychiatric Data: An Initial Replicability Assessment. | Daniel Prez-Rodrguez, Mateo Prez-Rodrguez, Roberto C. Ags-Balboa, Hugo Lpez-Fernndez |
| 2022 | Multiple Instance Learning Based on Mol2vec Molecular Substructure Embeddings for Discovery of NDM-1 Inhibitors. | Thomas Papastergiou, Jrme Az, Sandra Bringay, Maxime Louet, Pascal Poncelet, Laurent Gavara |
| 2022 | Exploring Xylella fastidiosa's Metabolic Traits Using a GSM Model of the Phytopathogenic Bacterium. | Alexandre Oliveira, Emanuel Cunha, Miguel Silva, Cristiana Faria, Oscar Dias |
| 2022 | Towards Improving Bio-Image Segmentation Quality Through Ensemble Post-processing of Deep Learning and Classical 3D Segmentation Pipelines. | Anuradha Kar |
| 2022 | Machine Learning and Deep Learning Techniques for Epileptic Seizures Prediction: A Brief Review. | Marco Hernndez, ngel Canal-Alonso, Fernando De la Prieta, Sara Rodrguez, Javier Prieto, Juan Manuel Corchado |
| 2022 | TooT-BERT-T: A BERT Approach on Discriminating Transport Proteins from Non-transport Proteins. | Hamed Ghazikhani, Gregory Butler |
| 2022 | The NAD Interactome, Identification of Putative New NAD-Binding Proteins. | Sara Duarte-Pereira, Srgio Matos, Jos Lus Oliveira, Raquel M. Silva |
| 2022 | Genomic Regions with Atypical Concentration of Inverted Repeats. | Carlos A. C. Bastos, Vera Afreixo, Joo M. O. S. Rodrigues, Armando J. Pinho |
| 2021 | A Hybrid of Bees Algorithm and Regulatory On/Off Minimization for Optimizing Lactate Production. | Mohd Izzat Yong, Mohd Saberi Mohamad, Yee Wen Choon, Weng Howe Chan, Hasyiya Karimah Adli, Khairul Nizar Syazwan Wan Salihin Wong, Nooraini Yusoff, Muhammad Akmal bin Remli |
| 2021 | Acufenometry in the Self-management of Tinnitus: A Revised Interface to Improve the User Experience. | Pierpaolo Vittorini, Pablo Chamoso, Fernando De la Prieta |
| 2021 | Recurrent Deep Neural Networks for Enzyme Functional Annotation. | Ana Marta Sequeira, Miguel Rocha |
| 2021 | A Study on Burrows-Wheeler Aligner's Performance Optimization for Ancient DNA Mapping. | Cindy Sarmento, Slvia Guimares, Glsah Merve Kilin, Anders Gtherstrm, Ana Elisabete Pires, Catarina Ginja, Nuno A. Fonseca |
| 2021 | On the Reproducibility of MiRNA-Seq Differential Expression Analyses in Neuropsychiatric Diseases. | Daniel Prez-Rodrguez, Hugo Lpez-Fernndez, Roberto C. Ags-Balboa |