| 2021 | Combinatorial Optimization of Succinate Production in Escherichia coli. | Vitor Pereira, Miguel Rocha |
| 2021 | Computational Tools for the Analysis of 2D-Nuclear Magnetic Resonance Data. | Bruno Pereira, Marcelo Maraschin, Miguel Rocha |
| 2021 | Deep Neural Network to Curate LTR Retrotransposon Libraries from Plant Genomes. | Simon Orozco-Arias, Mariana S. Candamil-Cortes, Paula A. Jaimes, Estiven Valencia-Castrillon, Reinel Tabares-Soto, Romain Guyot, Gustavo A. Isaza |
| 2021 | Towards a Multivariate Analysis of Genome-Scale Metabolic Models Derived from the BiGG Models Database. | Alexandre Oliveira, Emanuel Cunha, Fernando Cruz, Joo Capela, Joo Carlos Sequeira, Marta Sampaio, Oscar Dias |
| 2021 | The pegi3s Bioinformatics Docker Images Project. | Hugo Lpez-Fernndez, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira |
| 2021 | Using Reduced Amino-Acid Alphabets and Simulated Annealing to Identify Antimicrobial Peptides. | John Healy, Michela Caprani, Orla Slattery, Joan O'Keeffe |
| 2021 | Assessing the Impact of Data Set Enrichment to Improve Drug Sensitivity in Cancer. | Pedro Ferreira, Joo Ladeiras, Rui Camacho |
| 2021 | Predicting Adverse Drug Reactions from Drug Functions by Binary Relevance Multi-label Classification and MLSMOTE. | Pranab Das, Jerry W. Sangma, Vipin Pal, Yogita |
| 2021 | May Gender Have an Impact on Methylation Profile and Survival Prognosis in Acute Myeloid Leukemia? | Agnieszka Cecotka, Lukasz Krol, Grainne O'Brien, Christophe Badie, Joanna Polanska |
| 2021 | A Comparison of Different Compound Representations for Drug Sensitivity Prediction. | Delora Baptista, Joo Correia, Bruno Pereira, Miguel Rocha |
| 2021 | Computational Methods for the Identification of Genetic Variants in Complex Diseases. | Dbora Antunes, Daniel Martins, Fernanda Correia, Miguel Rocha, Joel P. Arrais |
| 2021 | BioTMPy: A Deep Learning-Based Tool to Classify Biomedical Literature. | Nuno Alves, Rben Rodrigues, Miguel Rocha |
| 2020 | Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform. | Joanna Zyla, Kinga Leszczorz, Joanna Polanska |
| 2020 | Machine Learning for Depression Screening in Online Communities. | Alina Trifan, Rui Antunes, Jos Lus Oliveira |
| 2020 | Towards Triclustering-Based Classification of Three-Way Clinical Data: A Case Study on Predicting Non-invasive Ventilation in ALS. | Diogo F. Soares, Rui Henriques, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira |
| 2020 | ProPythia: A Python Automated Platform for the Classification of Proteins Using Machine Learning. | Ana Marta Sequeira, Diana Lousa, Miguel Rocha |
| 2020 | Searching RNA Substructures with Arbitrary Pseudoknots. | Michela Quadrini |
| 2020 | A Health-Related Study from Food Online Reviews. The Case of Gluten-Free Foods. | Martn Prez-Prez, Anlia Loureno, Gilberto Igrejas, Florentino Fdez-Riverola |
| 2020 | The Activity of Bioinformatics Developers and Users in Stack Overflow. | Roi Prez-Lpez, Guillermo Blanco, Florentino Fdez-Riverola, Anlia Loureno |
| 2020 | Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines. | Alba Nogueira-Rodrguez, Hugo Lpez-Fernndez, Osvaldo Graa-Castro, Miguel Reboiro-Jato, Daniel Glez-Pea |
| 2020 | A Hybrid of Bat Algorithm and Minimization of Metabolic Adjustment for Succinate and Lactate Production. | Mei Yen Man, Mohd Saberi Mohamad, Yee Wen Choon, Mohd Arfian Ismail |
| 2020 | Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen. | Hugo Lpez-Fernndez, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira |
| 2020 | Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis. | Diogo Lima, Fernando Cruz, Miguel Rocha, Oscar Dias |
| 2020 | Hypoglycemia Prevention Using an Embedded Model Control with a Safety Scheme: In-silico Test. | Fabian Len-Vargas, Andrs L. Jutinico, Andrs Molano-Jimenez |
| 2020 | DeepACPpred: A Novel Hybrid CNN-RNN Architecture for Predicting Anti-Cancer Peptides. | Nathaniel Lane, Indika Kahanda |