| 2025 | ECAI | An Arbitration Control for an Ensemble of Diversified DQN Variants in Continual Reinforcement Learning. | Wonseo Jang, Dongjae Kim |
| 2022 | CogSci | Undoing in human planning. | Dongjae Kim, Sherry Dongqi Bao, Qixiu Fu, Wei Ji Ma |
| 2022 | CogSci | Reward Prediction Error Neurons Implement an Efficient Code for Reward. | Dongjae Kim, Heiko H. Schtt, Wei Ji Ma |
| 2018 | SMC | Model-Based BCI: A Novel Brain-Computer Interface Framework for Reading Out Learning Strategies Underlying Choices. | Dongjae Kim, Sang Wan Lee |
| 2018 | SMC | Hierarchical Control Architecture Regulating Competition between Model-Based and Context-Dependent Model-Free Reinforcement Learning Strategies. | Dongjae Kim, Geon Young Park, Sang Wan Lee |
| 2016 | CIBCB | FAST: Fast annotation with synchronized threads. | Dongjae Kim, Aria S. Hahn, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam |
| 2015 | CIBCB | Assembly independent functional annotation of short-read data using SOFA: Short-ORF functional annotation. | Aria S. Hahn, Niels W. Hanson, Dongjae Kim, Kishori M. Konwar, Steven J. Hallam |
| 2015 | CIBCB | FragGeneScan-plus for scalable high-throughput short-read open reading frame prediction. | Dongjae Kim, Aria S. Hahn, Shang-Ju Wu, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam |