| 2015 | HPDC | Sustained Software for Cyberinfrastructure: Analyses of Successful Efforts with a Focus on NSF-funded Software. | Craig A. Stewart, William K. Barnett, Eric A. Wernert, Julie A. Wernert, Von Welch, Richard Knepper |
| 2010 | ISVC | IQ-Station: A Low Cost Portable Immersive Environment. | William R. Sherman, Patrick O'Leary, Eric T. Whiting, Shane Grover, Eric A. Wernert |
| 2006 | VDA | Navigation techniques for large-scale astronomical exploration. | Chi-Wing Fu, Andrew J. Hanson, Eric A. Wernert |
| 2005 | SAC | PViN: a scalable and flexible system for visualizing pedigree databases. | Eric A. Wernert, Jagannathan Lakshmipathy |
| 2005 | Tapia | The john-e-box: fostering innovation, inclusion, and collaboration through accessible advanced visualization. | Eric A. Wernert, Mike Boyles, John N. Huffman, Jeffrey Rogers, John C. Huffman, Craig A. Stewart |
| 2003 | SIGUCCS | Advanced information technology support for life sciences research. | Craig A. Stewart, David Hart, Anurag Shankar, Eric A. Wernert, Richard Repasky, Mary Papakhian, Andrew D. Arenson, Gerry Bernbom |
| 2001 | SC | Parallel implementation and performance of fastDNAml: a program for maximum likelihood phylogenetic inference. | Craig A. Stewart, David Hart, Donald K. Berry, Gary J. Olsen, Eric A. Wernert, William Fischer |
| 2000 | VR | Tethering and Reattachment in Collaborative Virtual Environments. | Eric A. Wernert, Andrew J. Hanson |