| 2024 | ECAI | Detecting Hidden Triggers: Mapping Non-Markov Reward Functions to Markov. | Gregory Hyde, Eugene Santos Jr. |
| 2023 | AAAI | DUCK: A Drone-Urban Cyber-Defense Framework Based on Pareto-Optimal Deontic Logic Agents. | Tonmoay Deb, Jrgen Dix, Mingi Jeong, Cristian Molinaro, Andrea Pugliese, Alberto Quattrini Li, Eugene Santos Jr., V. S. Subrahmanian, Shanchieh Yang, Youzhi Zhang |
| 2023 | AAAI | Learning the Finer Things: Bayesian Structure Learning at the Instantiation Level. | Chase Yakaboski, Eugene Santos Jr. |
| 2020 | FlAIRS | Narrative Origin Classification of Israeli-Palestinian Conflict Texts. | Jason Wei, Eugene Santos Jr. |
| 2012 | IC3K | Finite Belief Fusion Model for Hidden Source Behavior Change Detection. | Eugene Santos Jr., Qi Gu, Eunice E. Santos, John Korah |
| 2012 | SAC | Multi-agent framework for real-time processing of large and dynamic search spaces. | John Korah, Eunice E. Santos, Eugene Santos Jr. |
| 2011 | SMC | Deception detection in human reasoning. | Deqing Li, Eugene Santos Jr. |
| 2009 | FlAIRS | Bayesian Knowledge Fusion. | Eugene Santos Jr., John Thomas Wilkinson, Eunice E. Santos |
| 2009 | SMC | A Framework for Reasoning Under Uncertainty with Temporal Constraints. | Eugene Santos Jr., Deqing Li, John Thomas Wilkinson |
| 2009 | SMC | On a Framework for the Prediction and Explanation of Changing Opinions. | Eunice E. Santos, Eugene Santos Jr., John Thomas Wilkinson, Huadong Xia |
| 2007 | SMC | Adaptivity modeling for complex adaptive systems with application to biology. | Donghang Guo, Eunice E. Santos, Ankit Singhal, Eugene Santos Jr., Qunhua Zhao |
| 2006 | PDPTA | A Framework for Complex Adaptive Systems. | Eunice E. Santos, Donghang Guo, Eugene Santos Jr., Qunhua Zhao, Ankit Singhal |
| 2004 | AI | Exploring Case-Based Bayesian Networks and Bayesian Multi-nets for Classification. | Ahmed Hussein, Eugene Santos Jr. |
| 2004 | AI | Detecting Deception in Intelligent Systems I: Activation of Deception Detection Tactics. | Gregory Johnson Jr., Eugene Santos Jr. |
| 2004 | BIBE | Reducing the Computational Load of Energy Evaluations for Protein Folding. | Eunice E. Santos, Eugene Santos Jr. |
| 2004 | IROS | Performance study of multi-agent scheduling and coordination framework for maintenance networks. | Feng Zhang, Peter B. Luh, Eugene Santos Jr. |
| 2004 | ICTAI | Modeling, Analysis and Visualization of Uncertainty in the Battlespace. | Bruce McQueary, Lee Krause, Eugene Santos Jr., Hua Wang, Qunhua Zhao |
| 2004 | ICTAI | Consistency of Test Cases in Validation of Bayesian Knowledge-Bases. | Eugene Santos Jr., Hang T. Dinh |
| 2004 | ICTAI | Exploring the Relationship between Knowledge and Algorithm Performance in Discrete Optimization. | Xiaomin Zhong, Eugene Santos Jr., Robert McCartney |
| 2004 | PDPTA | A Multi-Agent System Environment for Modelling Cell and Tissue Biology. | Eunice E. Santos, Donghang Guo, Eugene Santos Jr., William Onesty |
| 2003 | GECCO | Effective Search of the Energy Landscape for Protein Folding. | Eugene Santos Jr., Keum Joo Kim, Eunice E. Santos |
| 2003 | PDPTA | Mobile Multi-Agent-Based Scheduling and Coordination of Maintenance Networks. | Feng Zhang, Eugene Santos Jr., Peter B. Luh |
| 2002 | FlAIRS | Semantics and Knowledge Acquisition in Bayesian Knowledge-Bases. | Eugene Santos Jr., Eugene S. Santos, Solomon Eyal Shimony |
| 2002 | PDPTA | Solving Banded Triangular Linear Systems on 3-D Torus Networks. | Eunice E. Santos, Eugene S. Santos, Eugene Santos Jr. |
| 2001 | FlAIRS | Learning and Predicting User Behavior for Particular Resource Use. | Jung Jin Lee, Robert McCartney, Eugene Santos Jr. |
| 2001 | FlAIRS | A Computational Model for Portfolios of Cooperative Heterogeneous Algorithms for Discrete Optimization. | Eugene Santos Jr. |
| 2000 | FlAIRS | Generalizing Knowledge Representation Rules for Acquiring and Validating Uncertain Knowledge. | Gregory Johnson Jr., Eugene Santos Jr. |
| 2000 | FlAIRS | Cache Diversity in Genetic Algorithm Design. | Eunice E. Santos, Eugene Santos Jr. |
| 2000 | FlAIRS | Independence Semantics for BKBs. | Solomon Eyal Shimony, Eugene Santos Jr., Tzachi Rosen |
| 2000 | FlAIRS | Using Genetic Algorithms to Solve the Tactical Fixed Interval Scheduling Problem. | Xiaomin Zhong, Eugene Santos Jr. |
| 1999 | FlAIRS | Identifying and Handling Structural Incompleteness for Validation of Probabilistic Knowledge-Bases. | Eugene Santos Jr., Sheila B. Banks, Scott M. Brown, David J. Bawcom |
| 1999 | FlAIRS | Dynamic User Model Construction with Bayesian Networks for Intelligent Information Queries. | Eugene Santos Jr., Scott M. Brown, Moises Lejter, Grace Ngai, Sheila B. Banks, Martin R. Stytz |
| 1999 | FlAIRS | Solving Hard Computational Problems through Collections (Portfolios) of Cooperative Heterogeneous Algorithms. | Eugene Santos Jr., Solomon Eyal Shimony, Edward Michael Williams |
| 1999 | FlAIRS | Probabilistic Reasoning through Genetic Algorithms and Reinforcement Learning. | Xiaomin Zhong, Eugene Santos Jr. |
| 1998 | AI | Utility Theory-Based User Models for Intelligent Interface Agents. | Scott M. Brown, Eugene Santos Jr., Sheila B. Banks |
| 1997 | ICTAI | Enhancing Behavioral Fidelity within Distributed Virtual Environments. | Sheila B. Banks, Eugene Santos Jr., Martin R. Stytz |
| 1997 | UAI | Cost-Sharing in Bayesian Knowledge Bases. | Solomon Eyal Shimony, Carmel Domshlak, Eugene Santos Jr. |
| 1996 | ICTAI | Computer Generated Intelligent Companions for Distributed Virtual Environments. | Mark Edwards, Eugene Santos Jr., Sheila B. Banks, Martin R. Stytz |
| 1996 | ICTAI | GESIA: Uncertainty-based Reasoning for a Generic Expert Systems Intelligent User Interface. | Robert A. Harrington, Sheila B. Banks, Eugene Santos Jr. |
| 1996 | UAI | Sample-and-Accumulate Algorithms for Belief Updating in Bayes Networks. | Eugene Santos Jr., Solomon Eyal Shimony, Edward Michael Williams |
| 1994 | UAI | Belief Updating by Enumerating High-Probability Independence-based Assignments. | Eugene Santos Jr., Solomon Eyal Shimony |
| 1993 | ICTAI | A Fast Hill-Climbing Approach Without an Energy Function for Probabilistic Reasoning. | Eugene Santos Jr. |
| 1992 | AAAI | Dynamic MAP Calculations for Abduction. | Eugene Charniak, Eugene Santos Jr. |
| 1991 | UAI | On the Generation of Alternative Explanations with Implications for Belief Revision. | Eugene Santos Jr. |