| 2017 | ICCV | Efficient Algorithms for Moral Lineage Tracing. | Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres |
| 2016 | BMVC | Mapping Auto-context Decision Forests to Deep ConvNets for Semantic Segmentation. | David L. Richmond, Dagmar Kainmueller, Michael Ying Yang, Eugene W. Myers, Carsten Rother |
| 2016 | CVPR | Moral Lineage Tracing. | Florian Jug, Evgeny Levinkov, Corinna Blasse, Eugene W. Myers, Bjoern Andres |
| 2010 | MICCAI | Automatic Neuron Tracing in Volumetric Microscopy Images with Anisotropic Path Searching. | Jun Xie, Ting Zhao, Tzumin Lee, Eugene W. Myers, Hanchuan Peng |
| 2006 | ISMB | Interpreting anonymous DNA samples from mass disasters - probabilistic forensic inference using genetic markers. | Tien-ho Lin, Eugene W. Myers, Eric P. Xing |
| 2005 | ECCB | The fragment assembly string graph. | Eugene W. Myers |
| 2005 | ISMB | PILER: identification and classification of genomic repeats. | Robert C. Edgar, Eugene W. Myers |
| 2005 | ISMB | A motif-based framework for recognizing sequence families. | Roded Sharan, Eugene W. Myers |
| 2005 | RECOMB | Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. | Kim R. Rasmussen, Jens Stoye, Eugene W. Myers |
| 2004 | CPM | Two Algorithms for LCS Consecutive Suffix Alignment. | Gad M. Landau, Eugene W. Myers, Michal Ziv-Ukelson |
| 2004 | RECOMB | Comparing | Hanchuan Peng, Eugene W. Myers |
| 2001 | ISMB | Design of a compartmentalized shotgun assembler for the human genome. | Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Arthur L. Delcher, Ian M. Dew, Michael Flanigan, Aaron L. Halpern, Zhongwu Lai, Clark M. Mobarry, Granger G. Sutton, Eugene W. Myers |
| 2001 | RECOMB | The greedy path-merging algorithm for sequence assembly. | Daniel H. Huson, Knut Reinert, Eugene W. Myers |
| 2001 | WABI | Comparing Assemblies Using Fragments and Mate-Pairs. | Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton |
| 1999 | RECOMB | Algorithms for whole genome shotgun sequencing. | Eric L. Anson, Eugene W. Myers |
| 1998 | CPM | Reporting Exact and Approximate Regular Expression Matches. | Eugene W. Myers, Paulo Oliva, Katia S. Guimares |
| 1998 | RECOMB | Identifying satellites in nucleic acid sequences. | Marie-France Sagot, Eugene W. Myers |
| 1997 | RECOMB | ReAligner: a program for refining DNA sequence multi-alignments. | Eric L. Anson, Eugene W. Myers |
| 1997 | RECOMB | Algorithms for computing and integrating physical maps using unique probes. | Mudita Jain, Eugene W. Myers |
| 1993 | CPM | An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. | Sampath Kannan, Eugene W. Myers |
| 1992 | CPM | Approximate Regular Expression Pattern Matching with Concave Gap Penalties. | James R. Knight, Eugene W. Myers |
| 1984 | POPL | Efficient Applicative Data Types. | Eugene W. Myers |
| 1981 | ICSE | BIGMAC II: A FORTRAN Language Augmentation Tool. | Eugene W. Myers, Leon J. Osterweil |
| 1981 | POPL | A Precise Interprocedural Data Flow Algorithm. | Eugene W. Myers |