| 2022 | ICWE | The Laniakea Dashboard and Storage Encryption Components: A Foundation for Developing On-Demand Cloud Services for Life Science. | Marco Antonio Tangaro, Marica Antonacci, Pietro Mandreoli, Daniele Colombo, Nadina Foggetti, Giacinto Donvito, Graziano Pesole, Federico Zambelli |
| 2008 | APBC | GenePC and ASPIC Integrate Gene Predictions with Expressed Sequence Alignments To Predict Alternative Transcripts. | Tyler S. Alioto, Roderic Guig, Ernesto Picardi, Graziano Pesole |
| 2008 | CCGRID | HT-RLS: High-Throughput Web Tool for Analysis of DNA Microarray Data Using RLS classifiers. | Paolo D'Onorio De Meo, Danilo Carrabino, Mattia D'Antonio, Annarita D'Addabbo, Sabino Liuni, Flavio Mignone, Graziano Pesole, Nicola Ancona |
| 2006 | IJCNN | Classification error as a measure of gene relevance in cancer diagnosis. | Rosalia Maglietta, Annarita D'Addabbo, Ada Piepoli, Francesco Perri, Sabino Liuni, Graziano Pesole, Nicola Ancona |
| 2003 | ICTAI | Predicting Conserved Hairpin Motifs in Unaligned RNA Sequences. | Giulio Pavesi, Giancarlo Mauri, Graziano Pesole |
| 2003 | WABI | A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. | Paola Bonizzoni, Graziano Pesole, Raffaella Rizzi |
| 2001 | ISMB | An algorithm for finding signals of unknown length in DNA sequences. | Giulio Pavesi, Giancarlo Mauri, Graziano Pesole |