| 2025 | UC | Determining Isomorphic Crystal Structures. | Natasa Jonoska, Mil Krajcevski, Gregory L. McColm |
| 2016 | UC | Traversal Languages Capturing Isomorphism Classes of Sierpiński Gaskets. | Natasa Jonoska, Mil Krajcevski, Gregory L. McColm |
| 2014 | UC | Languages Associated with Crystallographic Symmetry. | Natasa Jonoska, Mile Krajcevski, Gregory L. McColm |
| 2008 | SOFSEM | Describing Self-assembly of Nanostructures. | Natasa Jonoska, Gregory L. McColm |
| 2006 | DNA | Spectrum of a Pot for DNA Complexes. | Natasa Jonoska, Gregory L. McColm, Ana Staninska |
| 2006 | UC | Flexible Versus Rigid Tile Assembly. | Natasa Jonoska, Gregory L. McColm |
| 2005 | DNA | Expectation and Variance of Self-assembled Graph Structures. | Natasa Jonoska, Gregory L. McColm, Ana Staninska |
| 2005 | UC | A Computational Model for Self-assembling Flexible Tiles. | Natasa Jonoska, Gregory L. McColm |
| 1996 | LICS | Zero-One Laws for Gilbert Random Graphs. | Gregory L. McColm |
| 1992 | FOCS | Hierarchies in Transitive Closure Logic, Stratified Datalog and Infinitary Logic | Erich Grdel, Gregory L. McColm |
| 1992 | LICS | Deterministic vs. Nondeterministic Transitive Closure Logic | Erich Grdel, Gregory L. McColm |