| 2010 | SAC | Advanced querying interface for biochemical network databases. | Brendan Elliott, Stephen Mayes, Ali Cakmak, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 2009 | DEXA | Progressive Evaluation of XML Queries for Online Aggregation and Progress Indicator. | Cheng Luo, Zhewei Jiang, Wen-Chi Hou, Gultekin zsoyoglu |
| 2008 | EDBT | Taxonomy-superimposed graph mining. | Ali Cakmak, Gultekin zsoyoglu |
| 2008 | ICDE | elGiza, a research-pyramid based search tool for vertical literature digital libraries. | Sulieman Bani-Ahmad, Gultekin zsoyoglu |
| 2008 | RECOMB | Protein Function Prediction Based on Patterns in Biological Networks. | Mustafa Kirac, Gultekin zsoyoglu |
| 2007 | ICDE | Evaluating Different Ranking Functions for Context-Based Literature Search. | Nattakarn Ratprasartporn, Sulieman Bani-Ahmad, Ali Cakmak, Jonathan Po, Gultekin zsoyoglu |
| 2007 | PSB | Annotating Genes Using Textual Patterns. | Ali Cakmak, Gultekin zsoyoglu |
| 2007 | SSDBM | Gene Ontology-Based Annotation Analysis and Categorization of Metabolic Pathways. | Ali Cakmak, Mustafa Kirac, Marc R. Reynolds, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 2006 | ICDE | Anti-Tamper Databases: Processing Aggregate Queries over Encrypted Databases. | Sun S. Chung, Gultekin zsoyoglu |
| 2006 | ISMB | Annotating proteins by mining protein interaction networks. | Mustafa Kirac, Gultekin zsoyoglu, Jiong Yang |
| 2006 | SSDBM | Task-Oriented Integrated Use of Biological Web Data Sources. | Mustafa Kirac, Ali Cakmak, Gultekin zsoyoglu |
| 2006 | SSDBM | On Data and Visualization Models for Signaling Pathways. | Nattakarn Ratprasartporn, Ali Cakmak, Gultekin zsoyoglu |
| 2003 | DBSEC | Anti-Tamper Databases: Querying Encrypted Databases. | Gultekin zsoyoglu, David A. Singer, Sun S. Chung |
| 2003 | DEXA | Selecting Topics for Web Resource Discovery: Efficiency Issues in a Database Approach. | Abdullah Al-Hamdani, Gultekin zsoyoglu |
| 2003 | DEXA | XML Restructuring and Integration for Tabular Data. | Wei Yu, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 2003 | SAC | Pathways Database System: An Integrated Set of Tools for Biological Pathways. | Wanhong Xu, Larkshmi Krishnamurthy, Murat Tasan, Gultekin zsoyoglu, Joseph H. Nadeau, Z. Meral zsoyoglu, Greg Schaeffer |
| 2002 | VLDB | Sideway Value Algebra for Object-Relational Databases. | Gultekin zsoyoglu, Abdullah Al-Hamdani, Ismail Sengr Altingvde, Selma Ayse zel, zgr Ulusoy, Z. Meral zsoyoglu |
| 2001 | DEXA | Topic-Centric Querying of Web Information Resources. | Ismail Sengr Altingvde, Selma Ayse zel, zgr Ulusoy, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1999 | ICDE | A Graph Query Language and Its Query Processing. | Lei Sheng, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1998 | DEXA | Selecting Actions to Trigger in Active Database Applications. | Huang-Cheng Kuo, Gultekin zsoyoglu |
| 1997 | CIKM | Real-Time Transactions with Execution Histories: Priority Assignment and Load Control. | Erdogan Dogdu, Gultekin zsoyoglu |
| 1997 | ICRA | A flexible software architecture for agile manufacturing. | Yoohwan Kim, Ju-Yeon Jo, Virgilio B. Velasco Jr., Nicholas A. Barendt, Andy Podgurski, Gultekin zsoyoglu, Frank L. Merat |
| 1997 | ICRA | A database server architecture for agile manufacturing. | Sungkil Lee, Huang-Cheng Kuo, Nevzat Hurkan Balkir, Gultekin zsoyoglu |
| 1997 | ICRA | Advances in agile manufacturing. | Frank L. Merat, Nick A. Barendt, Roger D. Quinn, Greg C. Causey, Wyatt S. Newman, Virgilio B. Velasco Jr., Andy Podgurski, Yoohwan Kim, Gultekin zsoyoglu, Ju-Yeon Jo |
| 1996 | CIKM | Adaptive real-time transactions and risk-based load control. | Erdogan Dogdu, Gultekin zsoyoglu |
| 1996 | CIKM | Distributed Processing of Time-Constrained Queries in CASE-DB. | Sungkil Lee, Gultekin zsoyoglu |
| 1996 | ICDE | VISUAL: A Graphical Icon-Based Query Language. | Nevzat Hurkan Balkir, Eser Skan, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1996 | ICDE | Automating the Assembly of Presentations from Multimedia Databases. | Gultekin zsoyoglu, Veli Hakkoymaz, Joel Kraft |
| 1996 | SSDBM | A Scientific Multimedia Database System for Polymer Science Experiments. | Taekyong Lee, Tolga Bozkaya, Huang-Cheng Kuo, Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1994 | SSDBM | A Scientific Database System for Polymers and Materials Engineering Needs. | Gultekin zsoyoglu, Z. Meral zsoyoglu, Kumar V. Vadaparty |
| 1994 | SSDBM | A Framework for Feature-Based Indexing for Spatial Databases. | Nasser Yazdani, Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1993 | DEXA | Modifying Datbase Queries and Error Constraints. | Kaizheng Du, Gultekin zsoyoglu |
| 1993 | SIGMOD | Towards a Unified Visual Database Access. | Kumar V. Vadaparty, Y. Alp Aslandogan, Gultekin zsoyoglu |
| 1992 | ICDE | Processing Real-Time, Non-Aggregate Queries with Time-Constraints in CASE-DB. | Gultekin zsoyoglu, Kaizheng Du, Sujatha Guru Swamy, Wen-Chi Hou |
| 1991 | DEXA | On Estimating COUNT, SUM, and AVERAGE. | Gultekin zsoyoglu, Kaizheng Du, A. Tjahjana, Wen-Chi Hou, D. Y. Rowland |
| 1991 | SIGMOD | Error-Constraint COUNT Query Evaluation in Relational Databases. | Wen-Chi Hou, Gultekin zsoyoglu, Erdogan Dogdu |
| 1990 | SSDBM | Database Systems for Programmable Logic Controllers. | Gultekin zsoyoglu, Wen-Chi Hou, Adegbemiga Ola |
| 1989 | DBSEC | Multivalued Dependency Inferences in Multilevel Relational Database Systems. | Tzong-An Su, Gultekin zsoyoglu |
| 1989 | SIGMOD | Processing Aggregate Relational Queries with Hard Time Constraints. | Wen-Chi Hou, Gultekin zsoyoglu, Baldeo K. Taneja |
| 1989 | SIGMOD | Real-Time Databases: Are they Real? | Gultekin zsoyoglu |
| 1989 | VLDB | A Family of Incomplete Relational Database Models. | Adegbemiga Ola, Gultekin zsoyoglu |
| 1989 | SP | On the Cell Suppression by Merging Technique in the Lattice Model of Summary Tables. | Tzong-An Su, JiYoung Chung, Gultekin zsoyoglu |
| 1988 | PODS | Statistical Estimators for Relational Algebra Expressions. | Wen-Chi Hou, Gultekin zsoyoglu, Baldeo K. Taneja |
| 1988 | VLDB | The Partial Normalized Storage Model of Nested Relations. | Aladdin Hafez, Gultekin zsoyoglu |
| 1987 | ICDE | Synthetic Query Response Construction in Scientific Databases with Time Constraints and Incomplete Information. | Gultekin zsoyoglu |
| 1987 | SP | Data Dependencies and Inference Control in Multilevel Relational Database Systems. | Tzong-An Su, Gultekin zsoyoglu |
| 1986 | ICDE | Information Loss in the Lattice Model of Summary Tables due to Cell Suppression. | Gultekin zsoyoglu, JiYoung Chung |
| 1986 | SSDBM | The Design and Implementation of the SSDB. | Amitava Datta, Bernadette Fournier, Wen-Chi Hou, Gultekin zsoyoglu |
| 1985 | PODS | On Optimizing Summary-Table-by-Example Queries. | Gultekin zsoyoglu, Victor Matos |
| 1985 | SIGMOD | A Language and a Physical Organization Technique for Summary Tables. | Gultekin zsoyoglu, Z. Meral zsoyoglu, Francisco Mata |
| 1985 | SP | Rounding and Inference Controlin Conceptual Models for Statistical Databases. | Gultekin zsoyoglu, Tzong-An Su |
| 1984 | ICDE | Summary-Table-By-Example: A Database Query Language for Manipulating Summary Data. | Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1984 | VLDB | Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1983 | SSDBM | Features of a System for Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |
| 1983 | SSDBM | An Extension of Relational Algebra for Summary Tables. | Z. Meral zsoyoglu, Gultekin zsoyoglu |
| 1981 | SSDBM | Update Handling Techniques in Statistical Databases. | Gultekin zsoyoglu, Z. Meral zsoyoglu |