| 2003 | PSB | Protein Threading by Linear Programming. | Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu |
| 2002 | WABI | Improved Approximation Algorithms for NMR Spectral Peak Assignment. | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu |
| 2001 | ICALP | The Longest Common Subsequence Problem for Sequences with Nested Arc Annotations. | Guo-Hui Lin, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen |
| 2001 | WADS | Computing Phylogenetic Roots with Bounded Degrees and Errors. | Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin |
| 2000 | COCOON | Better Bounds on the Accommodating Ratio for the Seat Reservation Problem. | Eric Bach, Joan Boyar, Tao Jiang, Kim S. Larsen, Guo-Hui Lin |
| 2000 | ISAAC | Phylogenetic | Guo-Hui Lin, Tao Jiang, Paul E. Kearney |
| 2000 | ISCAS | A linear time algorithm for computing hexagonal Steiner minimum trees for terminals on the boundary of a regular hexagon. | Guo-Hui Lin, Guoliang Xue |
| 2000 | ISCAS | Optimal layout of hexagonal minimum spanning trees in linear time [VLSI]. | Guo-Hui Lin, Guoliang Xue |
| 1999 | COCOON | Signed Genome Rearrangement by Reversals and Transpositions: Models and Approximations. | Guo-Hui Lin, Guoliang Xue |
| 1999 | ICCD | Approximating Hexagonal Steiner Minimal Trees by Fast Optimal Layout of Minimum Spanning Trees. | Guo-Hui Lin, Guoliang Xue, Defang Zhou |
| 1999 | ISCAS | The 1-Steiner tree problem in lambda-3 geometry plane. | Guo-Hui Lin, Andrew P. Thurber, Guoliang Xue |
| 1999 | ISCAS | Balancing Steiner minimum trees and shortest-path trees in the rectilinear plane. | Guo-Hui Lin, Guoliang Xue |
| 1999 | ISCAS | Grade of service Euclidean Steiner minimum trees. | Guoliang Xue, Guo-Hui Lin, Ding-Zhu Du |
| 1998 | ISAAC | The Steiner Tree Problem in Lambda | Guo-Hui Lin, Guoliang Xue |