| 2025 | WADS | Parameterized Streaming Algorithms for Topological Sorting. | Ho-Lin Chen, Peng-Ting Lin, Meng-Tsung Tsai |
| 2024 | UC | On the Simulation Power of Surface Chemical Reaction Networks. | Yi-Xuan Lee, Ho-Lin Chen |
| 2021 | COCOON | General Max-Min Fair Allocation. | Sheng-Yen Ko, Ho-Lin Chen, Siu-Wing Cheng, Wing-Kai Hon, Chung-Shou Liao |
| 2021 | ISAAC | Tight Competitive Analyses of Online Car-Sharing Problems. | Ya-Chun Liang, Kuan-Yun Lai, Ho-Lin Chen, Kazuo Iwama |
| 2021 | PODC | Time-Optimal Self-Stabilizing Leader Election in Population Protocols. | Janna Burman, Ho-Lin Chen, Hsueh-Ping Chen, David Doty, Thomas Nowak, Eric E. Severson, Chuan Xu |
| 2020 | PODC | Self-Stabilizing Leader Election in Regular Graphs. | Hsueh-Ping Chen, Ho-Lin Chen |
| 2019 | PODC | Self-Stabilizing Leader Election. | Hsueh-Ping Chen, Ho-Lin Chen |
| 2019 | UC | On the Complexity of Self-assembly Tasks. | Ho-Lin Chen |
| 2019 | UC | An Exponentially Growing Nubot System Without State Changes. | Chun-Ying Hou, Ho-Lin Chen |
| 2017 | DNA | A Minimal Requirement for Self-assembly of Lines in Polylogarithmic Time. | Yen-Ru Chin, Jui-Ting Tsai, Ho-Lin Chen |
| 2016 | ISAAC | An Improved Tax Scheme for Selfish Routing. | Te-Li Wang, Chih-Kuan Yeh, Ho-Lin Chen |
| 2014 | DNA | Fast Algorithmic Self-assembly of Simple Shapes Using Random Agitation. | Ho-Lin Chen, David Doty, Dhiraj Holden, Chris Thachuk, Damien Woods, Chun-Tao Yang |
| 2013 | SODA | Active Self-Assembly of Simple Units Using an Insertion Primitive. | Nadine Dabby, Ho-Lin Chen |
| 2012 | DNA | Deterministic Function Computation with Chemical Reaction Networks. | Ho-Lin Chen, David Doty, David Soloveichik |
| 2012 | SODA | Parallelism and time in hierarchical self-assembly. | Ho-Lin Chen, David Doty |
| 2011 | ISAAC | Program Size and Temperature in Self-Assembly. | Ho-Lin Chen, David Doty, Shinnosuke Seki |
| 2010 | DNA | Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems. | Ho-Lin Chen, Ming-Yang Kao |
| 2010 | ISIT | On the synthesis of stochastic flow networks. | Hongchao Zhou, Ho-Lin Chen, Jehoshua Bruck |
| 2009 | INFOCOM | On the Impact of Heterogeneity and Back-End Scheduling in Load Balancing Designs. | Ho-Lin Chen, Jason R. Marden, Adam Wierman |
| 2008 | SODA | Dimension augmentation and combinatorial criteria for efficient error-resistant DNA self-assembly. | Ho-Lin Chen, Ashish Goel, Chris Luhrs |
| 2008 | SODA | Designing networks with good equilibria. | Ho-Lin Chen, Tim Roughgarden, Gregory Valiant |
| 2006 | SPAA | Network design with weighted players. | Ho-Lin Chen, Tim Roughgarden |
| 2004 | DNA | Error Free Self-assembly Using Error Prone Tiles. | Ho-Lin Chen, Ashish Goel |
| 2004 | SODA | Invadable self-assembly: combining robustness with efficiency. | Ho-Lin Chen, Qi Cheng, Ashish Goel, Ming-Deh A. Huang, Pablo Moisset de Espans |
| 2002 | GD | Some Applications of Orderly Spanning Trees in Graph Drawing. | Ho-Lin Chen, Chien-Chih Liao, Hsueh-I Lu, Hsu-Chun Yen |
| 2000 | GD | On Maximum Symmetric Subgraphs. | Ho-Lin Chen, Hsueh-I Lu, Hsu-Chun Yen |
| 1999 | GD | Orthogonal and Straight-Line Drawings of Graphs with Succinct Representations. | Ho-Lin Chen, Hsu-Chun Yen |