| 2025 | CVPR | Effectiveness of Training with Procedurally Generated Synthetic Images of Crop Plants. | Nazifa Azam Khan, Mikolaj Cieslak, Mark G. Eramian, Ian McQuillan |
| 2025 | DLT | Relativized Codes, Finite Decodability, and Bounded Languages. | Oscar H. Ibarra, Ian McQuillan |
| 2025 | DLT | Left Quotients of Deterministic Context-Free Languages. | Brennan Lockinger, Ian McQuillan |
| 2025 | ECAI | FTIO: Frequent Temporally Integrated Objects. | Mohammad Mohammadzadeh Kalati, Farhad Maleki, Ian McQuillan |
| 2024 | DLT | Techniques for Showing the Decidability of the Boundedness Problem of Language Acceptors. | Oscar H. Ibarra, Ian McQuillan |
| 2023 | ATVA | On the Containment Problem for Deterministic Multicounter Machine Models. | Oscar H. Ibarra, Ian McQuillan |
| 2023 | FOSSACS | Unboundedness Problems for Machines with Reversal-Bounded Counters. | Pascal Baumann, Flavio D'Alessandro, Moses Ganardi, Oscar H. Ibarra, Ian McQuillan, Lia Schtze, Georg Zetzsche |
| 2022 | DLT | On the Complexity of Decision Problems for Counter Machines with Applications to Coding Theory. | Oscar H. Ibarra, Ian McQuillan |
| 2022 | DLT | Visit-Bounded Stack Automata. | Jozef Jirsek, Ian McQuillan |
| 2020 | CVPR | A Novel Technique Combining Image Processing, Plant Development Properties, and the Hungarian Algorithm, to Improve Leaf Detection in Maize. | Nazifa Azam Khan, Oliver A. S. Lyon, Mark G. Eramian, Ian McQuillan |
| 2020 | DLT | Space Complexity of Stack Automata Models. | Oscar H. Ibarra, Jozef Jirsek Jr., Ian McQuillan, Luca Prigioniero |
| 2020 | ICTAI | Inferring Temporal Parametric L-systems Using Cartesian Genetic Programming. | Jason Bernard, Ian McQuillan |
| 2018 | DLT | Generalizations of Checking Stack Automata: Characterizations and Hierarchies. | Oscar H. Ibarra, Ian McQuillan |
| 2018 | DLT | On Counting Functions of Languages. | Oscar H. Ibarra, Ian McQuillan, Bala Ravikumar |
| 2018 | ICTAI | Inferring Stochastic L-Systems Using a Hybrid Greedy Algorithm. | Jason Bernard, Ian McQuillan |
| 2018 | UC | Algorithms for Inferring Context-Sensitive L-Systems. | Ian McQuillan, Jason Bernard, Przemyslaw Prusinkiewicz |
| 2017 | DLT | Variations of Checking Stack Automata: Obtaining Unexpected Decidability Properties. | Oscar H. Ibarra, Ian McQuillan |
| 2017 | LATA | On Finite-Index Indexed Grammars and Their Restrictions. | Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan |
| 2017 | UC | Descrambling Order Analysis in Ciliates. | Nazifa Azam Khan, Ian McQuillan |
| 2016 | DLT | On Families of Full Trios Containing Counter Machine Languages. | Oscar H. Ibarra, Ian McQuillan |
| 2015 | DLT | On the Density of Context-Free and Counter Languages. | Joey Eremondi, Oscar H. Ibarra, Ian McQuillan |
| 2015 | LATA | Insertion Operations on Deterministic Reversal-Bounded Counter Machines. | Joey Eremondi, Oscar H. Ibarra, Ian McQuillan |
| 2015 | TAMC | Deletion Operations on Deterministic Families of Automata. | Joey Eremondi, Oscar H. Ibarra, Ian McQuillan |
| 2015 | UC | Simulation of the 2JLP Gene Assembly Process in Ciliates. | Md. Sowgat Ibne Mahmud, Ian McQuillan |
| 2012 | DLT | Generalized Derivations with Synchronized Context-Free Grammars. | Markus Holzer, Sebastian Jakobi, Ian McQuillan |
| 2008 | IV | No Going Back: An Interactive Visualization Application for Trailblazing on the Web. | Christopher Power, Ian McQuillan, Helen Petrie, Peter Kennaugh, Mark Daley, Geoff Wozniak |
| 2006 | COCOON | Iterated TGR Languages: Membership Problem and Effective Closure Properties. | Ian McQuillan, Kai Salomaa, Mark Daley |
| 2005 | DNA | On Computational Properties of Template-Guided DNA Recombination. | Mark Daley, Ian McQuillan |