| 2009 | ICMLA | Comparative Analysis of Support Vector Machines Based on Linear and Quadratic Optimization Criteria. | Alexey Nefedov, Jiankuan Ye, Casimir A. Kulikowski, Ilya B. Muchnik, Kenton Morgan |
| 2008 | ICPR | Coring method for clustering a graph. | Thang V. Le, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2008 | ISVC | A Graph-Based Approach for Image Segmentation. | Thang V. Le, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2006 | CVPR | Discriminative Patch Selection using Combinatorial and Statistical Models for Patch-Based Object Recognition. | Akshay Vashist, Zhipeng Zhao, Ahmed M. Elgammal, Ilya B. Muchnik, Casimir A. Kulikowski |
| 2006 | RECOMB | Protein Function Annotation Based on Ortholog Clusters Extracted from Incomplete Genomes Using Combinatorial Optimization. | Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2005 | CIBCB | Protein-Protein Interaction Prediction Based on Sequence Data by Support Vector Machine with Probability Assignment. | Jiankuan Ye, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2005 | WABI | Ortholog Clustering on a Multipartite Graph. | Akshay Vashist, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2004 | ICTAI | Distinguishing Mislabeled Data from Correctly Labeled Data in Classifier Design. | Sundara Venkataraman, Dimitris N. Metaxas, Dmitriy Fradkin, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2002 | ICPR | Featureless Pattern Recognition in an Imaginary Hilbert Space. | Vadim Mottl, Oleg Seredin, Sergey D. Dvoenko, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2000 | ICPR | Pattern Recognition in Spatial Data: A New Method of Seismic Explorations for Oil and Gas in Crystalline Basement Rocks. | Vadim Mottl, Sergey D. Dvoenko, Vladimir Levyant, Ilya B. Muchnik |
| 1999 | ISMB | Analysis of Ribosomal RNA Sequences by Combinatorial Clustering. | Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn |
| 1998 | ICPR | Variational methods in signal and image analysis. | Vadim Mottl, Alexander Blinov, Andrey Kopylov, Alexey Kostin, Ilya B. Muchnik |
| 1997 | ISMB | Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors. | Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim |
| 1996 | ICPR | Hidden tree-like quasi-Markov model and generalized technique for a class of image processing problems. | Vadim Mottl, Ilya B. Muchnik, Alexander Blinov, Andrey Kopylov |
| 1995 | ISMB | Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. | Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik |