| 2025 | KES | Raman spectroscopy and machine learning can quantitatively asses clindamycin in liquid samples. | Eduard C. Milea, Andreia Alecu, Alice Stoica, Marian Necula, Ion Petre, Simona Litescu, Mihaela Paun |
| 2025 | KES | Machine Learning meets Raman spectroscopy: a systematic review of literature in cancer diagnostics. | Bogdan Oancea, Marian Necula, Eduard-Costin Milea, Alexandru Amarioarei, Ion Petre, Mihaela-Marinela Paun |
| 2014 | CiE | Fit-Preserving Data Refinement of Mass-Action Reaction Networks. | Cristian Gratie, Ion Petre |
| 2009 | CiE | Computational Heuristics for Simplifying a Biological Model. | Ion Petre, Andrzej Mizera, Ralph-Johan Back |
| 2007 | DNA | Solutions to Computational Problems Through Gene Assembly. | Artiom Alhazov, Ion Petre, Vladimir Rogojin |
| 2007 | FCT | A String-Based Model for Simple Gene Assembly. | Robert Brijder, Miika Langille, Ion Petre |
| 2007 | UC | Computing Through Gene Assembly. | Tseren-Onolt Ishdorj, Ion Petre |
| 2005 | DNA | Simple Operations for Gene Assembly. | Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz Rozenberg |
| 2004 | DNA | Parallelism in Gene Assembly. | Tero Harju, Chang Li, Ion Petre, Grzegorz Rozenberg |
| 2003 | STACS | The Commutation with Codes and Ternary Sets of Words. | Juhani Karhumki, Michel Latteux, Ion Petre |
| 2001 | DNA | Patterns of Micronuclear Genes in ciliates. | Andrzej Ehrenfeucht, Tero Harju, Ion Petre, Grzegorz Rozenberg |
| 2000 | ICALP | On the Centralizer of a Finite Set. | Juhani Karhumki, Ion Petre |
| 1999 | DLT | On semilinearity in formal power series. | Ion Petre |