| 2019 | COMPSAC | Polysizemic Encryption: Towards a Variable-Length Output Symmetric-Key Cryptosystem. | Jacob Hendricks, Brandon Burke, Thoshitha T. Gamage |
| 2018 | DNA | Know When to Fold 'Em: Self-assembly of Shapes by Folding in Oritatami. | Erik D. Demaine, Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Nicolas Schabanel, Shinnosuke Seki, Hadley Thomas |
| 2018 | DNA | Self-assembly of 3-D Structures Using 2-D Folding Tiles. | Jrme Durand-Lose, Jacob Hendricks, Matthew J. Patitz, Ian Perkins, Michael Sharp |
| 2018 | DNA | Hierarchical Growth Is Necessary and (Sometimes) Sufficient to Self-assemble Discrete Self-similar Fractals. | Jacob Hendricks, Joseph Opseth, Matthew J. Patitz, Scott M. Summers |
| 2018 | UC | Thermodynamically Favorable Computation via Tile Self-assembly. | Cameron T. Chalk, Jacob Hendricks, Matthew J. Patitz, Michael Sharp |
| 2017 | UC | Self-Assembly of 4-Sided Fractals in the Two-Handed Tile Assembly Model. | Jacob Hendricks, Joseph Opseth |
| 2016 | DNA | Hierarchical Self-Assembly of Fractals with Signal-Passing Tiles - (Extended Abstract). | Jacob Hendricks, Meagan Olsen, Matthew J. Patitz, Trent A. Rogers, Hadley Thomas |
| 2016 | FOCS | Universal Simulation of Directed Systems in the Abstract Tile Assembly Model Requires Undirectedness. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2016 | SODA | Computing in continuous space with self-assembling polygonal tiles (extended abstract). | Oscar Gilbert, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | DNA | Reflections on Tiles (in Self-Assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | MCU | The Simulation Powers and Limitations of Hierarchical Self-Assembly Systems. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2015 | SODA | Universal Computation with Arbitrary Polyomino Tiles in Non-Cooperative Self-Assembly. | Sndor P. Fekete, Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Robert T. Schweller |
| 2015 | UC | Replication of Arbitrary Hole-Free Shapes via Self-assembly with Signal-Passing Tiles. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2014 | COCOON | The Power of Duples (in Self-Assembly): It's Not So Hip to Be Square. | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers, Scott M. Summers |
| 2014 | UC | Doubles and Negatives are Positive (in Self-assembly). | Jacob Hendricks, Matthew J. Patitz, Trent A. Rogers |
| 2013 | DNA | Signal Transmission across Tile Assemblies: 3D Static Tiles Simulate Active Self-assembly by 2D Signal-Passing Tiles. | Jacob Hendricks, Jennifer E. Padilla, Matthew J. Patitz, Trent A. Rogers |
| 2013 | HCI | Supporting Distributed Search in Virtual Worlds. | Hiep Phuc Luong, Dipesh Gautam, John M. Gauch, Susan Gauch, Jacob Hendricks |