| 2026 | AAAI | Colonel Blotto with Battlefield Games. | Salam Afiouni, Jakub Cern, Chun Kai Ling, Christian Kroer |
| 2026 | AAAI | Spatial Branch-and-Bound for Computing Multiplayer Nash Equilibrium. | Jakub Cern, Shuvomoy Das Gupta, Christian Kroer |
| 2026 | AAAI | Security Games with Layered Defenses: Adaptive Adversaries and Gittins Indices. | Chun Kai Ling, Jakub Cern, Chin Hui Han, Garud Iyengar, Christian Kroer |
| 2025 | AAAI | Commitment to Sparse Strategies in Two-Player Games. | Salam Afiouni, Jakub Cern, Chun Kai Ling, Christian Kroer |
| 2024 | IJCAI | Layered Graph Security Games. | Jakub Cern, Chun Kai Ling, Christian Kroer, Garud Iyengar |
| 2023 | AAAI | Solving Large-Scale Pursuit-Evasion Games Using Pre-trained Strategies. | Shuxin Li, Xinrun Wang, Youzhi Zhang, Wanqi Xue, Jakub Cern, Bo An |
| 2021 | AAAI | Computing Ex Ante Coordinated Team-Maxmin Equilibria in Zero-Sum Multiplayer Extensive-Form Games. | Youzhi Zhang, Bo An, Jakub Cern |
| 2021 | AAAI | Computing Quantal Stackelberg Equilibrium in Extensive-Form Games. | Jakub Cern, Viliam Lis, Branislav Bosansk, Bo An |
| 2021 | AAAI | Complexity and Algorithms for Exploiting Quantal Opponents in Large Two-Player Games. | David Milec, Jakub Cern, Viliam Lis, Bo An |
| 2020 | IJCAI | Dinkelbach-Type Algorithm for Computing Quantal Stackelberg Equilibrium. | Jakub Cern, Viliam Lis, Branislav Bosansk, Bo An |
| 2019 | CogSci | Evaluating Models of Human Behavior in an Adversarial Multi-Armed Bandit Problem. | Marcus Gutierrez, Jakub Cern, Noam Ben-Asher, Efrat Aharonov-Majar, Branislav Bosansk, Christopher Kiekintveld, Cleotilde Gonzalez |
| 2007 | GD | Improvement on the Decay of Crossing Numbers. | Jakub Cern, Jan Kyncl, Gza Tth |
| 2007 | SODA | Single source multiroute flows and cuts on uniform capacity networks. | Henning Bruhn, Jakub Cern, Alexander Hall, Petr Kolman |
| 2003 | GD | Noncrossing Hamiltonian Paths in Geometric Graphs. | Jakub Cern, Zdenek Dvork, Vt Jelnek, Jan Kra |
| 2001 | GD | On Intersection Graphs of Segments with Prescribed Slopes. | Jakub Cern, Daniel Krl, Helena Nyklov, Ondrej Pangrc |