| 2025 | ICCV | Adapting Vision-Language Models for 3D CT/MRI Understanding on PMBB via Slice Selection and Explanation Analysis. | Hongzhuo Chen, Rahul Shukla, Ruiming Wu, Shu Yang, Duy Duong-Tran, Duy Minh Ho Nguyen, Mathias Niepert, Cameron Beeche, James C. Gee, Jeffrey T. Duda, Rakesh Sharma, Christos Davatzikos, Walter R. Witschey, Bojian Hou, Li Shen |
| 2025 | ICML | Diversity By Design: Leveraging Distribution Matching for Offline Model-Based Optimization. | Michael S. Yao, James C. Gee, Osbert Bastani |
| 2023 | CVPR | Beyond mAP: Towards Better Evaluation of Instance Segmentation. | Rohit Jena, Lukas Zhornyak, Nehal Doiphode, Pratik Chaudhari, Vivek Buch, James C. Gee, Jianbo Shi |
| 2023 | MICCAI | SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification. | Michael S. Yao, Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey T. Duda, James C. Gee, Drew A. Torigian, Daniel J. Rader, Charles E. Kahn, Walter R. Witschey, Hersh Sagreiya |
| 2022 | CVPR | NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration. | Yifan Wu, Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee |
| 2020 | CVPR | Nested Scale-Editing for Conditional Image Synthesis. | Lingzhi Zhang, Jiancong Wang, Yinshuang Xu, Jie Min, Tarmily Wen, James C. Gee, Jianbo Shi |
| 2020 | MICCAI | Interpretable Identification of Interstitial Lung Disease (ILD) Associated Findings from CT. | Yifan Wu, Jiancong Wang, William Lindsay, Tarmily Wen, Jianbo Shi, James C. Gee |
| 2020 | WACV | Enhanced generative adversarial network for 3D brain MRI super-resolution. | Jiancong Wang, Yuhua Chen, Yifan Wu, Jianbo Shi, James C. Gee |
| 2019 | ICIG | Combining Cross Entropy Loss with Manually Defined Hard Example for Semantic Image Segmentation. | Zelu Deng, Jianbin Gao, Tao Huang, James C. Gee |
| 2019 | ICIG | Hybird Single-Multiple Frame Super-Resolution Reconstruction of Video Face Image. | Jianbin Gao, Huan Tang, James C. Gee |
| 2019 | MICCAI | Shape Decomposition of Foveal Pit Morphology Using Scan Geometry Corrected OCT. | Min Chen, James C. Gee, Jessica I. W. Morgan, Geoffrey Karl Aguirre |
| 2019 | MICCAI | Interpretable Multimodality Embedding of Cerebral Cortex Using Attention Graph Network for Identifying Bipolar Disorder. | Huzheng Yang, Xiaoxiao Li, Yifan Wu, Siyi Li, Su Lu, James S. Duncan, James C. Gee, Shi Gu |
| 2018 | HealthCom | A Blockchain-based Architecture Framework for Secure Sharing of Personal Health Data. | Sandro Amofa, Emmanuel Boateng Sifah, Kwame Opuni-Boachie Obour Agyekum, Abla Smahi, Qi Xia, James C. Gee, Jianbin Gao |
| 2018 | MICCAI | 2D Modeling and Correction of Fan-Beam Scan Geometry in OCT. | Min Chen, James C. Gee, Jerry L. Prince, Geoffrey Karl Aguirre |
| 2018 | MICCAI | Transfer Learning Approach to Predict Biopsy-Confirmed Malignancy of Lung Nodules from Imaging Data: A Pilot Study. | William Lindsay, Jiancong Wang, Nicholas Sachs, Eduardo Barbosa, James C. Gee |
| 2018 | MICCAI | Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS. | Baris U. Oguz, Jiancong Wang, Natalie Yushkevich, Alison M. Pouch, James C. Gee, Paul A. Yushkevich, Nadav Schwartz, Ipek Oguz |
| 2017 | MICCAI | Automated Segmentation of the Choroid in EDI-OCT Images with Retinal Pathology Using Convolution Neural Networks. | Min Chen, Jiancong Wang, Ipek Oguz, Brian L. Vanderbeek, James C. Gee |
| 2014 | MICCAI | Single-Subject Structural Networks with Closed-Form Rotation Invariant Matching Improve Power in Developmental Studies of the Cortex. | Benjamin M. Kandel, Danny J. J. Wang, James C. Gee, Brian B. Avants |
| 2013 | MICCAI | Fusing Functional Signals by Sparse Canonical Correlation Analysis Improves Network Reproducibility. | Jeffrey T. Duda, John A. Detre, Junghoon Kim, James C. Gee, Brian B. Avants |
| 2013 | MICCAI | Optic Disc and Cup Segmentation from Color Fundus Photograph Using Graph Cut with Priors. | Yuanjie Zheng, Dwight Stambolian, Joan O'Brien, James C. Gee |
| 2013 | MICCAI | A Generative Model for OCT Retinal Layer Segmentation by Integrating Graph-Based Multi-surface Searching and Image Registration. | Yuanjie Zheng, Rui Xiao, Yan Wang, James C. Gee |
| 2012 | MICCAI | Eigenanatomy Improves Detection Power for Longitudinal Cortical Change. | Brian B. Avants, Paramveer S. Dhillon, Benjamin M. Kandel, Philip A. Cook, Corey McMillan, Murray Grossman, James C. Gee |
| 2011 | MICCAI | Adaptive Multi-cluster Fuzzy C-Means Segmentation of Breast Parenchymal Tissue in Digital Mammography. | Brad M. Keller, Diane Nathan, Yan Wang, Yuanjie Zheng, James C. Gee, Emily F. Conant, Despina Kontos |
| 2011 | MICCAI | Brain Parcellation Aids in Electrode Localization in Epileptic Patients. | Jue Wu, Kathryn A. Davis, Allan Azarion, Yuanjie Zheng, Hongzhi Wang, Brian Litt, James C. Gee |
| 2010 | CVPR | Estimation of image bias field with sparsity constraints. | Yuanjie Zheng, James C. Gee |
| 2010 | MICCAI | Sparse Unbiased Analysis of Anatomical Variance in Longitudinal Imaging. | Brian B. Avants, Philip A. Cook, Corey McMillan, Murray Grossman, Nicholas J. Tustison, Yuanjie Zheng, James C. Gee |
| 2010 | MICCAI | Relating Structural and Functional Connectivity to Performance in a Communication Task. | Jeffrey T. Duda, Corey McMillan, Murray Grossman, James C. Gee |
| 2009 | MICCAI | Gender Differences in Cerebral Cortical Folding: Multivariate Complexity-Shape Analysis with Insights into Handling Brain-Volume Differences. | Suyash P. Awate, Paul A. Yushkevich, Daniel J. Licht, James C. Gee |
| 2009 | MICCAI | A Tract-Specific Framework for White Matter Morphometry Combining Macroscopic and Microscopic Tract Features. | Hui Zhang, Suyash P. Awate, Sandhitsu R. Das, John H. Woo, Elias R. Melhem, James C. Gee, Paul A. Yushkevich |
| 2009 | MICCAI | Tensor-Based Morphometry of Fibrous Structures with Application to Human Brain White Matter. | Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee |
| 2009 | MICCAI | Automatic Correction of Intensity Nonuniformity from Sparseness of Gradient Distribution in Medical Images. | Yuanjie Zheng, Murray Grossman, Suyash P. Awate, James C. Gee |
| 2008 | CVPR | Multivariate analysis of thalamo-cortical connectivity loss in TBI. | Jeffrey T. Duda, Brian B. Avants, Junghoon Kim, Hui Zhang, Sunil Patel, John Whyte, James C. Gee |
| 2008 | CVPR | Robust regularization for the estimation of intra-voxel axon fiber orientations. | Alonso Ramirez-Manzanares, Hui Zhang, Mariano Rivera, James C. Gee |
| 2008 | MICCAI | 3D Cerebral Cortical Morphometry in Autism: Increased Folding in Children and Adolescents in Frontal, Parietal, and Temporal Lobes. | Suyash P. Awate, Lawrence Win, Paul A. Yushkevich, Robert T. Schultz, James C. Gee |
| 2008 | MICCAI | A Comparison of Methods for Recovering Intra-voxel White Matter Fiber Architecture from Clinical Diffusion Imaging Scans. | Alonso Ramirez-Manzanares, Philip A. Cook, James C. Gee |
| 2008 | MICCAI | Cardiac Medial Modeling and Time-Course Heart Wall Thickness Analysis. | Hui Sun, Brian B. Avants, Alejandro F. Frangi, Federico Sukno, James C. Gee, Paul A. Yushkevich |
| 2008 | MICCAI | Shape-Based Alignment of Hippocampal Subfields: Evaluation in Postmortem MRI. | Paul A. Yushkevich, Brian B. Avants, John Pluta, David Minkoff, John A. Detre, Murray Grossman, James C. Gee |
| 2007 | ICCV | Measuring Cortical Thickness Using An Image Domain Local Surface Model And Topology Preserving Segmentation. | Sandhitsu R. Das, Brian B. Avants, Murray Grossman, James C. Gee |
| 2007 | ICCV | Multi-start Method with Prior Learning for Image Registration. | Gang Song, Brian B. Avants, James C. Gee |
| 2007 | ICCV | Improved FFD B-Spline Image Registration. | Nicholas J. Tustison, Brian B. Avants, James C. Gee |
| 2007 | ICCV | Structure-Specific Statistical Mapping of White Matter Tracts using the Continuous Medial Representation. | Paul A. Yushkevich, Hui Zhang, Tony J. Simon, James C. Gee |
| 2007 | MICCAI | Spatiotemporal Normalization for Longitudinal Analysis of Gray Matter Atrophy in Frontotemporal Dementia. | Brian B. Avants, Chivon Anderson, Murray Grossman, James C. Gee |
| 2007 | MICCAI | Multivariate Normalization with Symmetric Diffeomorphisms for Multivariate Studies. | Brian B. Avants, Jeffrey T. Duda, Hui Zhang, James C. Gee |
| 2007 | MICCAI | Fuzzy Nonparametric DTI Segmentation for Robust Cingulum-Tract Extraction. | Suyash P. Awate, Hui Zhang, James C. Gee |
| 2007 | MICCAI | How Do Registration Parameters Affect Quantitation of Lung Kinematics? | Tessa Sundaram Cook, Nicholas J. Tustison, Jrgen Biederer, Ralf Tetzlaff, James C. Gee |
| 2007 | MICCAI | Clinical Neonatal Brain MRI Segmentation Using Adaptive Nonparametric Data Models and Intensity-Based Markov Priors. | Zhuang Song, Suyash P. Awate, Daniel J. Licht, James C. Gee |
| 2007 | MICCAI | Evaluation of Shape-Based Normalization in the Corpus Callosum for White Matter Connectivity Analysis. | Hui Sun, Paul A. Yushkevich, Hui Zhang, Philip A. Cook, Jeffrey T. Duda, Tony J. Simon, James C. Gee |
| 2007 | MICCAI | Unbiased White Matter Atlas Construction Using Diffusion Tensor Images. | Hui Zhang, Paul A. Yushkevich, Daniel Rueckert, James C. Gee |
| 2006 | CVPR | Analyzing Effects of Intra-Uterine Cocaine Exposure on Adolescent Brain Structure with Symmetric Diffeomorphisms. | Brian B. Avants, Hallam Hurt, Joan M. Giannetta, Charles L. Epstein, Jiongjiong Wang, James C. Gee |
| 2006 | CVPR | Efficient Generation of Shape-Based Reference Frames for the Corpus Callosum for DTI-based Connectivity Analysis. | Hui Sun, Paul A. Yushkevich, Hui Zhang, James C. Gee, Tony J. Simon |
| 2006 | MICCAI | Integrated Graph Cuts for Brain MRI Segmentation. | Zhuang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee |
| 2006 | MICCAI | Hippocampus-Specific fMRI Group Activation Analysis with Continuous M-Reps. | Paul A. Yushkevich, John A. Detre, Kathy Z. Tang, Angela Hoang, Dawn Mechanic-Hamilton, Mara A. Fernndez-Seara, Marc Korczykowski, Hui Zhang, James C. Gee |
| 2005 | CBMS | Reducing the Computational Cost for Statistical Medical Image Analysis: An MRI Study on the Sexual Morphological Differentiation of the Corpus Callosum. | Despina Kontos, Vasileios Megalooikonomou, James C. Gee |
| 2005 | MICCAI | An Automated Approach to Connectivity-Based Partitioning of Brain Structures. | Philip A. Cook, Hui Zhang, Brian B. Avants, Paul A. Yushkevich, Daniel C. Alexander, James C. Gee, Olga Ciccarelli, Alan J. Thompson |
| 2005 | MICCAI | Towards a Dynamic Model of Pulmonary Parenchymal Deformation: Evaluation of Methods for Temporal Reparameterization of Lung Data. | Tessa A. Sundaram, Brian B. Avants, James C. Gee |
| 2005 | MICCAI | Statistical Modeling of Shape and Appearance Using the Continuous Medial Representation. | Paul A. Yushkevich, Hui Zhang, James C. Gee |
| 2005 | MICCAI | Deformable Registration of Diffusion Tensor MR Images with Explicit Orientation Optimization. | Hui Zhang, Paul A. Yushkevich, James C. Gee |
| 2004 | BMVC | Two--level MRF Models for Image Restoration and Segmentation. | Mariano Rivera, James C. Gee |
| 2004 | CVPR | Registration of Diffusion Tensor Images. | Hui Zhang, Paul A. Yushkevich, James C. Gee |
| 2004 | ECCV | Symmetric Geodesic Shape Averaging and Shape Interpolation. | Brian B. Avants, James C. Gee |
| 2004 | MICCAI | Regional Structural Characterization of the Brain of Schizophrenia Patients. | Abraham Dubb, Paul A. Yushkevich, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee |
| 2004 | MICCAI | A Dynamic Model of Average Lung Deformation Using Capacity-Based Reparameterization and Shape Averaging of Lung MR Images. | Tessa A. Sundaram, Brian B. Avants, James C. Gee |
| 2003 | MICCAI | Characterization of Brain Plasticity in Schizophrenia Using Template Deformation. | Abraham Dubb, Zhiyong Xie, Ruben C. Gur, Raquel E. Gur, James C. Gee |
| 2002 | AMIA | Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. | Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee |
| 2002 | ECCV | Image Segmentation by Flexible Models Based on Robust Regularized Networks. | Mariano Rivera, James C. Gee |
| 2002 | MICCAI | Shape Characterization of the Corpus Callosum in Schizophrenia Using Template Deformation. | Abraham Dubb, Brian B. Avants, Ruben C. Gur, James C. Gee |
| 2002 | MICCAI | Characterization of Regional Pulmonary Mechanics from Serial MRI Data. | James C. Gee, Tessa A. Sundaram, Ichiro Hasegawa, Hidemasa Uematsu, Hiroto Hatabu |
| 2002 | MICCAI | Using Voxel-Based Morphometry to Examine Atrophy-Behavior Correlates in Alzheimer's Disease and Frontotemporal Dementia. | Michael P. Lin, Christian Devita, James C. Gee, Murray Grossman |
| 2002 | MICCAI | Efficient Partial Volume Tissue Classification in MRI Scans. | Aljaz Noe, James C. Gee |
| 2001 | MICCAI | Computing Match Functions for Curves in R | Brian B. Avants, Marcelo Siqueira, James C. Gee |
| 1999 | BMVC | Similarity Measures for Matching Diffusion Tensor Images. | Daniel C. Alexander, James C. Gee, Ruzena Bajcsy |
| 1999 | CVPR | Elastic Matching of Diffusion Tensor MRIs. | Daniel C. Alexander, James C. Gee, Ruzena Bajcsy |
| 1999 | MICCAI | Strategies for Data Reorientation during Non-rigid Warps of Diffusion Tensor Images. | Daniel C. Alexander, James C. Gee, Ruzena Bajcsy |
| 1999 | MICCAI | Exploratory Factor Analysis in Morphometry. | Alexei Manso Corra Machado, James C. Gee, Mario Fernando Montenegro Campos |