| 2025 | GECCO | PropNEAT - Efficient GPU-Compatible Backpropagation over NeuroEvolutionary Augmenting Topology Networks. | Michael Merry, Patricia Riddle, James R. Warren |
| 2008 | APSEC | Towards Analysing Information Management Requirements in New Zealand Genetic Services. | Yulong Gu, James R. Warren |
| 2006 | CSCWD | Managing Knowledge in the Human Genetic Variation (HGV) Testing Context. | Yulong Gu, James R. Warren, Jan Stanek |
| 2006 | CSCWD | A System Architecture Design for Knowledge Management (KM) in Medical Genetic Testing (MGT) Laboratories. | Yulong Gu, James R. Warren, Jan Stanek, Graeme Suthers |
| 2005 | AMIA | Understanding Caseload and Practice through Analysis of Therapeutic State Transitions. | James R. Warren, Svetla Gadzhanova, Jan Stanek, Ivan I. Iankov |
| 2000 | ITiCSE | Structural example-based adaptive tutoring system (poster session) (SEATS). | Alex Davidovic, James R. Warren, Elena Trichina |
| 1999 | AMIA | On-Line Guidance for Coordinated Care. | Joseph T. Noone, James R. Warren |
| 1999 | AMIA | Intelligent split menus for data entry: a simulation study in general practice medicine. | James R. Warren, Patrick Bolton |
| 1999 | AMIA | Can computer autoacquisition of medical information meet the needs of the future? A feasibility study in direct computation of the fine grained electronic medical record. | James R. Warren, Ben Posey, Thomas Thornton, Pirouz Parang |
| 1997 | AIME | An Adaptive Two-Tier Menu Approach to Support On-Line Entry of Diagnoses. | Sugath K. Mudali, James R. Warren, Susan E. Spenceley |
| 1993 | CIKM | A Knowledge-Based Patient Data Acquisition System for Primary Care Medicine. | James R. Warren, Debra E. Warren, Richard W. Freedman |