| 2023 | WiMob | A Review of AI-based MANET Routing Protocols. | Fatemeh Safari, Izabela Savic, Herb Kunze, Jason Ernst, Daniel Gillis |
| 2021 | ICML | Marginal Contribution Feature Importance - an Axiomatic Approach for Explaining Data. | Amnon Catav, Boyang Fu, Yazeed Zoabi, Ahuva Weiss-Meilik, Noam Shomron, Jason Ernst, Sriram Sankararaman, Ran Gilad-Bachrach |
| 2021 | ISTAS | Co-designing a community-led Internet assessment tool in Rigolet, Nunatsiavut, Canada. | Nic Durish, Rekkab Gill, Patrick Houlding, Charlie Flowers, Inez Shiwak, Jason Ernst, Daniel Gillis |
| 2011 | RECOMB | Discovery and Characterization of Chromatin States for Systematic Annotation of the Human Genome. | Jason Ernst, Manolis Kellis |
| 2008 | COCOA | Algorithms and Implementation for Interconnection Graph Problem. | Hongbing Fan, Christian Hundt, Yu-Liang Wu, Jason Ernst |
| 2008 | FPL | Customized Reconfigurable Interconnection Networks for multiple application SOCS. | Hongbing Fan, Jason Ernst, Yu-Liang Wu |
| 2005 | ISMB | Clustering short time series gene expression data. | Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph |