| 2006 | GECCO | Characterizing the dynamics of symmetry breaking in genetic programming. | Jason M. Daida |
| 2005 | GECCO | Towards identifying populations that increase the likelihood of success in genetic programming. | Jason M. Daida |
| 2005 | GECCO | Probing for limits to building block mixing with a tunably-difficult problem for genetic programming. | Jason M. Daida, Michael E. Samples, Matthew J. Byom |
| 2005 | GECCO | Parameter sweeps for exploring GP parameters. | Michael E. Samples, Jason M. Daida, Matthew J. Byom, Matt Pizzimenti |
| 2005 | GECCO | Parameter sweeps for exploring GP parameters. | Michael E. Samples, Jason M. Daida, Matthew J. Byom, Matt Pizzimenti |
| 2004 | CEC | Demonstrating constraints to diversity with a tunably difficult problem for genetic programming. | Jason M. Daida, Michael E. Samples, Bryan T. Hart, Jeffry Halim, Aditya Kumar |
| 2004 | CEC | Visualizing the loss of diversity in genetic programming. | Jason M. Daida, David J. Ward, Adam M. Hilss, Stephen L. Long, Mark R. Hodges, Jason T. Kriesel |
| 2003 | GECCO | Identifying Structural Mechanisms in Standard Genetic Programming. | Jason M. Daida, Adam M. Hilss |
| 2003 | GECCO | Visualizing Tree Structures in Genetic Programming. | Jason M. Daida, Adam M. Hilss, David J. Ward, Stephen L. Long |
| 2003 | GECCO | What Makes a Problem GP-Hard? Validating a Hypothesis of Structural Causes. | Jason M. Daida, Hsiaolei Li, Ricky Tang, Adam M. Hilss |
| 2002 | CEC | Limits to expression in genetic programming: lattice-aggregate modeling. | Jason M. Daida |
| 2000 | GECCO | Characterizing a Tunably Difficult Problem in Genetic Programming. | Omer A. Chaudhri, Jason M. Daida, Jonathan C. Khoo, Wendell S. Richardsons, Rachel Harrison, William J. Sloat |
| 2000 | GECCO | Classification of Spectral Image Using Genetic Programming. | Patrick J. Rauss, Jason M. Daida, Shahbaz A. Chaudhary |
| 1999 | CEC | Of metaphors and Darwinism: deconstructing genetic programming's chimera. | Jason M. Daida, Seth P. Yalcin, Paul M. Litvak, Gabriel A. Eickhoff, John A. Polit |
| 1999 | CEC | (1+1) genetic algorithm fitness dynamics in a changing environment. | Stephen A. Stanhope, Jason M. Daida |
| 1999 | GECCO | Challenges with Verification, Repeatability, and Meaningful Comparison in Genetic Programming: Gibson's Magic. | Jason M. Daida, Derrick S. Ampy, Michael Ratanasavetavadhana, Hsiaolei Li, Omar A. Chaudhri |
| 1999 | GECCO | What Makes a Problem GP-Hard? Analysis of a Tunably Difficult Problem in Genetic Programming. | Jason M. Daida, John Polito, Steven A. Stanhope, Robert R. Bertram, Jonathan C. Khoo, Shahbaz A. Chaudhary |
| 1997 | ICEC | A Java collaborative interface for genetic programming applications: image analysis for scientific inquiry. | Tommaso F. Bersano-Begey, Jason M. Daida, John F. Vesecky, Frank L. Ludwig |
| 1994 | ICIP | Hybrid Computational Architectures for Image Segmentation. | Jason M. Daida |