| 2017 | GECCO | Solving a large sudoku by co-evolving numerals. | Jeffrey Horn |
| 2013 | GECCO | NP-completeness and the coevolution of exact set covers. | Jeffrey Horn |
| 2013 | GECCO | Quality versus quantity of rules in a classifier jury: extended abstract. | Jeffrey Horn, Matthew J. Holliday, Dylan J. Elliott, Joshua A. Chomicki, David A. Pfeiffer, Steven M. Scheel, Lewis D. Steiner, Erik P. Wisuri, James M. Zeits, Jordan M. Bal, Chelsea G. Burton, Micah A. Erickson, Nicholas D. McIntyre-Wyma |
| 2010 | IJCCI | Pure Co-evolution for Shape Nesting. | Jeffrey Horn |
| 2008 | PPSN | Optimal Nesting of Species for Exact Cover: Many against Many. | Jeffrey Horn |
| 2007 | GECCO | Optimal nesting of species for exact cover of resources: two against many. | Jeffrey Horn |
| 2005 | CEC | Coevolving species for shape nesting. | Jeffrey Horn |
| 2005 | GECCO | Shape nesting by coevolving species. | Jeffrey Horn |
| 2003 | EMO | Niche Distributions on the Pareto Optimal Front. | Jeffrey Horn |
| 2003 | GECCO | The Paradox of the Plankton: Oscillations and Chaos in Multispecies Evolution. | Jeffrey Horn, James Cattron |
| 2002 | PPSN | Resource-Based Fitness Sharing. | Jeffrey Horn |
| 2001 | EMO | The Niched Pareto Genetic Algorithm 2 Applied to the Design of Groundwater Remediation Systems. | Mark Erickson, Alex Mayer, Jeffrey Horn |
| 1998 | FOGA | Toward a Control Map for Niching. | Jeffrey Horn, David E. Goldberg |
| 1998 | PPSN | A Timing Analysis of Convergence to Fitness Sharing Equilibrium. | Jeffrey Horn, David E. Goldberg |
| 1994 | FOGA | Genetic Algorithm Difficulty and the Modality of Fitness Landscapes. | Jeffrey Horn, David E. Goldberg |
| 1994 | ICEC | A Niched Pareto Genetic Algorithm for Multiobjective Optimization. | Jeffrey Horn, Nicholas Nafpliotis, David E. Goldberg |
| 1994 | PPSN | Long Path Problems. | Jeffrey Horn, David E. Goldberg, Kalyanmoy Deb |
| 1992 | PPSN | Massive Multimodality, Deception, and Genetic Algorithms. | David E. Goldberg, Kalyanmoy Deb, Jeffrey Horn |