| 2022 | BIBE | A Model-Based Prognostic Predictor for Urothelial Bladder Carcinoma Through the Integrated Bioinformatics Analysis. | Charles C. N. Wang, Tzu-Tsen Yu, Jeffrey J. P. Tsai |
| 2020 | AMIA | Development of A Blockchain Framework for Virtual Clinical Trials. | Yan Zhuang, Lincoln Sheets, Xiyuan Gao, Yuanyuan Shen, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu |
| 2019 | AMIA | Applying Blockchain Technology to Enhance Clinical Trial Recruitment. | Yan Zhuang, Lincoln Sheets, Zonyin Shae, Yin-Wu Chen, Jeffrey J. P. Tsai, Chi-Ren Shyu |
| 2019 | ICDCS | AI Blockchain Platform for Trusting News. | Zonyin Shae, Jeffrey J. P. Tsai |
| 2018 | AMIA | Applying Blockchain Technology for Health Information Exchange and Persistent Monitoring for Clinical Trials. | Yan Zhuang, Lincoln Sheets, Zonyin Shae, Jeffrey J. P. Tsai, Chi-Ren Shyu |
| 2018 | BIBE | Identification of Potential Long Non-coding RNA Biomarkers for Breast Cancer Patients with Somatic BRCA1 Mutations from RNA-Seq Datasets. | Jia-Hua Cai, Yu-Ching Chen, Hsueh-Ting Chu, Jeffrey J. P. Tsai |
| 2018 | BIBE | The Potential Dual-Target Inhibitors for HER2/HSP90 Proteins from Traditional Chinese Medicine. | Jhih-Ying Chen, Chia-Min Chen, Pei-Chun Chang, Jeffrey J. P. Tsai |
| 2018 | BIBE | Identification of Several Core Overexpressed MicroRNAs that Could Predict Survival in Patients with Ovarian Cancer. | Eskezeia Yihunie Dessie, Ezra B. Wijaya, Chien-Hung Huang, David Agustriawan, Jeffrey J. P. Tsai, Ka-Lok Ng |
| 2018 | BIBE | Stratification of Human Gut Microiome and Building a SVM-Based Classifier. | His-Chung Kung, Rong-Ming Chen, Jeffrey J. P. Tsai, Rouh-Mei Hu |
| 2018 | BIBE | Computational Modeling of the Early Development of Embryonic Leaves in Maize. | Charles C. N. Wang, Pei-Chun Chang, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2018 | BIBE | Quantitative Analysis of ECI2 Expression from RNA-Seq for Breast Cancer Gene Signatures. | Ming-Yi Yen, Hsueh-Ting Chu, Yu-Ching Chen, Jeffrey J. P. Tsai |
| 2018 | HPCC | Trust as a Service for IoT Service Management in Smart Cities. | Ing-Ray Chen, Jia Guo, Ding-Chao Wang, Jeffrey J. P. Tsai, Hamid Al-Hamadi, Ilsun You |
| 2017 | BIBE | Extracting the Co-occurrences of DNA Maximal Repeats in both Human and Viruses. | Jing-Doo Wang, Yi-Chun Wang, Rouh-Mei Hu, Jeffrey J. P. Tsai |
| 2017 | ICDCS | On the Design of a Blockchain Platform for Clinical Trial and Precision Medicine. | Zonyin Shae, Jeffrey J. P. Tsai |
| 2016 | BIBE | Stent Design for Compensating Wall Shear Stress via Computational Modeling and Fluid Dynamics. | Chun-Ming Chang, Wei Shin Wong, Jeffrey J. P. Tsai |
| 2016 | BIBE | Genome-Wide Functional Identification of Maximal Consensus Patterns Derived from Multiple Species piRNAs. | Wen-Ling Chan, Mei-Chun Yeh, Jing-Doo Wang, Jan-Gowth Chang, Jeffrey J. P. Tsai |
| 2016 | BIBE | Fine Classification of Human Gut Microbiota by Using Hierarchical Clustering Approach. | Tzu-Fan Chen, Rong-Ming Chen, Jeffrey J. P. Tsai, Rouh-Mei Hu |
| 2016 | BIBE | Deep Learning for Risk Analysis of Specific Cardiovascular Diseases Using Environmental Data and Outpatient Records. | Han C. W. Hsiao, Sean H. F. Chen, Jeffrey J. P. Tsai |
| 2016 | BIBE | Identification and Analysis of Palindromes for RNA Sequences. | Chien-Hung Huang, Sheng-Jia Weng, Praveen Kumar Korla, Jywe-Fei Fang, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, Ka-Lok Ng |
| 2016 | BIBE | piRNAtarget: The Integrated Database for Mining Functionality of piRNA and Its Targets. | Bing-Rong Jiang, Wan-Ye Wu, Ching-Hsuan Chien, Jeffrey J. P. Tsai, Wen-Ling Chan |
| 2016 | BIBE | A Comparison Study of Reverse Engineering Gene Regulatory Network Modeling. | Charles C. N. Wang, Pei-Chun Chang, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2016 | BIBE | Application of Latent Semantic Analysis to Clustering of Cardiovascular Gene Ontology. | Charles C. N. Wang, Yu-Liang Lee, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2016 | CIBCB | Mining distinctive DNA patterns from the upstream of human coding&non-coding genes via class frequency distribution. | Jing-Doo Wang, Wen-Ling Chan, Charles C. N. Wang, Jan-Gowth Chang, Jeffrey J. P. Tsai |
| 2016 | ICSOC | Trust-Based IoT Participatory Sensing for Hazard Detection and Response. | Jia Guo, Ing-Ray Chen, Jeffrey J. P. Tsai, Hamid Al-Hamadi |
| 2011 | BIBE | Ergonomic Designs Based on Musculoskeletal Models. | Chun-Ming Chang, Jeffrey J. P. Tsai |
| 2011 | BIBE | The Application of Molecular Markers to Identify Edible Fungi: A Case Study of Tremella Fuciformis. | Jing-Gung Chung, Jeffrey J. P. Tsai, Chien-Yih Lin, Yang-Chia Shih, Jin-Shih Chen, Ming-Jen Fan |
| 2011 | BIBE | TTRSIS: A Cloud Computing Platform for Rice Functional Genomics Research through a Reverse Genetics Approach. | Ming-Jen Fan, Su-May Yu, Tzu-Chieh Hung, Wei-Quan Chen, Yue-Ie Hsing, Hsin-Li Lin, Chia-Cheng Liu, Jing-Gung Chung, Jeffrey J. P. Tsai |
| 2011 | BIBE | Molecular Modeling Studies of AmpR Mediated AmpC -Lactamase Repression. | David A. Hecht, Charles C. N. Wang, Rouh-Mei Hu, Jeffrey J. P. Tsai |
| 2011 | BIBE | Object Relational Programming of Biomedical Images. | Han C. W. Hsiao, Rouh-Mei Hu, Wei-Liang Tai, Rong-Ming Chen, Jeffrey J. P. Tsai |
| 2011 | BIBE | Investigating Cancer-related Proteins Specific Domain Interactions and Differential Protein Interactions Caused by Alternative Splicing. | Yu-Liang Lee, Jie-Wei Weng, Wen-Chin Chiang, Yi-Wen Lin, Ka-Lok Ng, Jeffrey J. P. Tsai, Chi-Ying F. Huang |
| 2011 | BIBE | Simulation of Bacterial Chemotaxis by the Random Run and Tumble Model. | Charles C. N. Wang, Ka-Lok Ng, Yu-Ching Chen, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2011 | ISM | Blood Cell Image Classification Based on Hierarchical SVM. | Wei-Liang Tai, Rouh-Mei Hu, Han C. W. Hsiao, Rong-Ming Chen, Jeffrey J. P. Tsai |
| 2009 | BIBE | Phylogenetic Analysis Using Nuclear-Encoded Mitochondrial Proteins. | Alan C. H. Chen, Han C. W. Hsiao, Jeffrey J. P. Tsai |
| 2009 | BIBE | A Novel Approach for Motif Identification in Unaligned Molecular Sequences. | Rong-Ming Chen, M. T. Hou, Jeffrey J. P. Tsai |
| 2009 | BIBE | SCDL Applications to Drug Discovery. | David A. Hecht, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2009 | BIBE | An Integrative Tool for Gene Regulatory Network Reconstruction Based on Microarray Data. | Jong-Waye Ou, Rouh-Mei Hu, Rong-Ming Chen, C. Y. Tang, Jeffrey J. P. Tsai |
| 2009 | BIBE | Describing Dynamic Biological Systems in SPDL and SCDL. | Charles C. N. Wang, David A. Hecht, Han C. W. Hsiao, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2008 | ICWS | A Context-Driven Content Adaptation Planner for Improving Mobile Internet Accessibility. | Stephen J. H. Yang, Jia Zhang, Angus F. M. Huang, Jeffrey J. P. Tsai, Philip S. Yu |
| 2008 | ISORC | A Framework for Extrusion Detection Using Machine Learning. | Yan Luo, Jeffrey J. P. Tsai |
| 2006 | ATC | Fuzzy Model Tuning for Intrusion Detection Systems. | Zhenwei Yu, Jeffrey J. P. Tsai |
| 2006 | COMPSAC | Separating Functional and Non-functional Concerns through Coordination: An Application to Reliability. | Pierre-Etienne Poirot, Shangping Ren, Jerzy Nogiec, Jeffrey J. P. Tsai |
| 2006 | ISM | Issues, Challenges, and Future Directions in Multimedia Research. | Masahito Hirakawa, Max Mhlhuser, Susanto Rahardja, Phillip C.-Y. Sheu, Larry Smarr, Jeffrey J. P. Tsai |
| 2005 | ISM | A Graphical Simulation System for Modeling and Analysis of Sensor Networks. | Yan Luo, Jeffrey J. P. Tsai |
| 2005 | RECOMB | Topological Robustness of the Protein-Protein Interaction Networks. | Chien-Hung Huang, Jywe-Fei Fang, Jeffrey J. P. Tsai, Ka-Lok Ng |
| 2004 | BIBE | Using Distributed Computing Platform to Solve High Computing and Huge Data Processing Problems in Bioinformatics. | Shih-Nung Chen, Jeffrey J. P. Tsai, Chih-Wei Huang, Rong-Ming Chen, Raymond C. K. Lin |
| 2004 | BIBE | FMGA: Finding Motifs by Genetic Algorithm. | Falcon F. M. Liu, Jeffrey J. P. Tsai, Rong-Ming Chen, S. N. Chen, S. H. Shih |
| 2004 | COMPSAC | A Secure Mobile Agent System Model Based on Extended Elementary Object System. | Lu Ma, Jeffrey J. P. Tsai, Tadao Murata |
| 2004 | COMPSAC | A Multi-Class SLIPPER System for Intrusion Detection. | Zhenwei Yu, Jeffrey J. P. Tsai |
| 2003 | BIBE | A Framework for Cancer-Related Genes Mining over the Internet. | Jeffrey J. P. Tsai, Jan-Gowth Chang, S. H. Shih, Rong-Ming Chen, Han-Wen Hsiao, Rouh-Mei Hu, S. N. Chen, M. M. Lee, Falcon F. M. Liu, Wen-Ling Chan |
| 2002 | ICTAI | Machine Learning and Software Engineering. | Du Zhang, Jeffrey J. P. Tsai |
| 2001 | ISADS | Formal Analysis of Software Security System Architectures. | Yi Deng, Jiacun Wang, Jeffrey J. P. Tsai |
| 1996 | COMPSAC | Verifying Timing Properties for Distributed Real-Time Systems Using Timing Constraint Petri Nets. | Jeffrey J. P. Tsai, Stephen J. H. Yang, Yao-Hsiung Chang, Eric Y. T. Juan |
| 1996 | SEKE | Verification Criterion Directed Testing for Formal Specifications. | Ziaomu Zeng, Jeffrey J. P. Tsai, Thomas J. Weigert |
| 1995 | COMPSAC | Improving Software Quality through a Novel Testing Strategy. | Xiaomu Zeng, Jeffrey J. P. Tsai, Thomas J. Weigert |
| 1995 | ICTAI | A knowledge-based approach to requirements analysis. | Alan Liu, Jeffrey J. P. Tsai |
| 1994 | COMPSAC | Modeling and parallel evaluation of non-functional requirements using FRORL requirements language. | Jeffrey J. P. Tsai, Bing Li, Alan Liu |
| 1993 | ISADS | A requirements language for autonomous decentralized systems development. | Jeffrey J. P. Tsai |
| 1993 | SEKE | Debugging Logic-Based Requirements Specifications - a FRORL Approach. | Jeffrey J. P. Tsai, Alan Liu, Krishnakumar R. Nair |
| 1992 | COMPSAC | A framework of a logic-based transformation system. | Jeffrey J. P. Tsai, Ray-Yuan Sheu, Bing Li |
| 1991 | COMPSAC | RT-FRORL: a formal requirements specification language for specifying real-time systems. | Jeffrey J. P. Tsai, Hung-Chin Jang, Karen J. Schellinger |
| 1991 | IJCAI | A Distributed Cooperative Agents Architecture for Software Development. | Jeffrey J. P. Tsai, Ray-Yuan Sheu |
| 1991 | ICTAI | An event-based real-time logic to specify the behavior and timing properties of real-time systems. | Horng-Yuan Chen, Jeffrey J. P. Tsai, Yao-Dong Bi |
| 1991 | ISSRE | Timing errors in real-time systems and their detection. | Jeffrey J. P. Tsai, Yao-Dong Bi |
| 1990 | COMPSAC | On real-time software testing and debugging. | Jeffrey J. P. Tsai, Kwang-Ya Fang, Yao-Dong Bi |
| 1990 | ICTAI | KB/RMS: an intelligent assistant for requirement definition. | Robert V. Binder, Jeffrey J. P. Tsai |
| 1990 | ICTAI | A hybrid knowledge representation as a basis of requirement specification and reasoning. | Jeffrey J. P. Tsai, Thomas J. Weigert, Hung-Chin Jang |
| 1989 | COMPSAC | A knowledge-based debugger for real-time software systems based on a noninterference testing architecture. | Jeffrey J. P. Tsai, Kwang-Ya Fang, Horng-Yuan Chen |
| 1989 | COMPSAC | Exploratory prototyping through the use of frames and production rules. | Jeffrey J. P. Tsai, Thomas Weigert |
| 1989 | ICTAI | A frame and rule based system to support software development using an integrated software engineering paradigm. | Jeffrey J. P. Tsai, Shun-Tzu Tsai, Alan Liu |
| 1988 | COMPSAC | Rapid prototyping using FRORL language. | Jeffrey J. P. Tsai, Mikio Aoyama, Y. L. Chang |
| 1988 | COMPSAC | Expert systems and software engineering. | Jeffrey J. P. Tsai, David Y. Yun, Mehdi T. Harandi, Murat M. Tanik, Wei-Tek Tsai, Walt Scacchi |
| 1987 | ICRA | Route planning for intelligent autonomous land vehicles using hierarchical terrain representation. | Nark B. Metea, Jeffrey J. P. Tsai |