| 2025 | ICLR | IgGM: A Generative Model for Functional Antibody and Nanobody Design. | Rubo Wang, Fandi Wu, Xingyu Gao, Jiaxiang Wu, Peilin Zhao, Jianhua Yao |
| 2025 | ICLR | Atomas: Hierarchical Adaptive Alignment on Molecule-Text for Unified Molecule Understanding and Generation. | Yikun Zhang, Geyan Ye, Chaohao Yuan, Bo Han, Long-Kai Huang, Jianhua Yao, Wei Liu, Yu Rong |
| 2025 | ICML | Steering Protein Language Models. | Long-Kai Huang, Rongyi Zhu, Bing He, Jianhua Yao |
| 2025 | KDD | Annotation-guided Protein Design with Multi-Level Domain Alignment. | Chaohao Yuan, Songyou Li, Geyan Ye, Yikun Zhang, Long-Kai Huang, Wenbing Huang, Wei Liu, Jianhua Yao, Yu Rong |
| 2024 | AAAI | A Label Disambiguation-Based Multimodal Massive Multiple Instance Learning Approach for Immune Repertoire Classification. | Fan Xu, Yu Zhao, Bingzhe Wu, Yueshan Huang, Qin Ren, Yang Xiao, Bing He, Jie Zheng, Jianhua Yao |
| 2024 | ICML | Knowledge-aware Reinforced Language Models for Protein Directed Evolution. | Yuhao Wang, Qiang Zhang, Ming Qin, Xiang Zhuang, Xiaotong Li, Zhichen Gong, Zeyuan Wang, Yu Zhao, Jianhua Yao, Keyan Ding, Huajun Chen |
| 2024 | ICML | StableMask: Refining Causal Masking in Decoder-only Transformer. | Qingyu Yin, Xuzheng He, Xiang Zhuang, Yu Zhao, Jianhua Yao, Xiaoyu Shen, Qiang Zhang |
| 2024 | KDD | Relaxing Continuous Constraints of Equivariant Graph Neural Networks for Broad Physical Dynamics Learning. | Zinan Zheng, Yang Liu, Jia Li, Jianhua Yao, Yu Rong |
| 2023 | IJCAI | A Noisy-Label-Learning Formulation for Immune Repertoire Classification and Disease-Associated Immune Receptor Sequence Identification. | Mingcai Chen, Yu Zhao, Zhonghuang Wang, Bing He, Jianhua Yao |
| 2023 | MICCAI | An Unsupervised Multispectral Image Registration Network for Skin Diseases. | Songhui Diao, Wenxue Zhou, Chenchen Qin, Jun Liao, Junzhou Huang, Wenming Yang, Jianhua Yao |
| 2023 | MICCAI | IIB-MIL: Integrated Instance-Level and Bag-Level Multiple Instances Learning with Label Disambiguation for Pathological Image Analysis. | Qin Ren, Yu Zhao, Bing He, Bingzhe Wu, Sijie Mai, Fan Xu, Yueshan Huang, Yonghong He, Junzhou Huang, Jianhua Yao |
| 2022 | CVPR | Multimodal Dynamics: Dynamical Fusion for Trustworthy Multimodal Classification. | Zongbo Han, Fan Yang, Junzhou Huang, Changqing Zhang, Jianhua Yao |
| 2022 | ECCV | ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images. | Jiawei Yang, Hanbo Chen, Yuan Liang, Junzhou Huang, Lei He, Jianhua Yao |
| 2022 | ICLR | Towards Better Understanding and Better Generalization of Low-shot Classification in Histology Images with Contrastive Learning. | Jiawei Yang, Hanbo Chen, Jiangpeng Yan, Xiaoyu Chen, Jianhua Yao |
| 2022 | MICCAI | Ideal Midsagittal Plane Detection Using Deep Hough Plane Network for Brain Surgical Planning. | Chenchen Qin, Wenxue Zhou, Jianbo Chang, Yihao Chen, Dasheng Wu, Yixun Liu, Ming Feng, Renzhi Wang, Wenming Yang, Jianhua Yao |
| 2022 | MICCAI | ReMix: A General and Efficient Framework for Multiple Instance Learning Based Whole Slide Image Classification. | Jiawei Yang, Hanbo Chen, Yu Zhao, Fan Yang, Yao Zhang, Lei He, Jianhua Yao |
| 2022 | MICCAI | SETMIL: Spatial Encoding Transformer-Based Multiple Instance Learning for Pathological Image Analysis. | Yu Zhao, Zhenyu Lin, Kai Sun, Yidan Zhang, Junzhou Huang, Liansheng Wang, Jianhua Yao |
| 2021 | IROS | PiPo-Net: A Semi-automatic and Polygon-based Annotation Method for Pathological Images. | Yuqi Fang, Delong Zhu, Niyun Zhou, Li Liu, Jianhua Yao |
| 2021 | MICCAI | From Pixel to Whole Slide: Automatic Detection of Microvascular Invasion in Hepatocellular Carcinoma on Histopathological Image via Cascaded Networks. | Hanbo Chen, Kang Wang, Yuyao Zhu, Jiangpeng Yan, Yan Ji, Jingjing Li, Dong Xie, Junzhou Huang, Shuqun Cheng, Jianhua Yao |
| 2021 | MICCAI | Multi-modal Multi-instance Learning Using Weakly Correlated Histopathological Images and Tabular Clinical Information. | Hang Li, Fan Yang, Xiaohan Xing, Yu Zhao, Jun Zhang, Yueping Liu, Mengxue Han, Junzhou Huang, Liansheng Wang, Jianhua Yao |
| 2021 | MICCAI | DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image. | Hang Li, Fan Yang, Yu Zhao, Xiaohan Xing, Jun Zhang, Mingxuan Gao, Junzhou Huang, Liansheng Wang, Jianhua Yao |
| 2021 | MICCAI | 3D Brain Midline Delineation for Hematoma Patients. | Chenchen Qin, Haoming Li, Yixun Liu, Hong Shang, Hanqi Pei, Xiaoning Wang, Yihao Chen, Jianbo Chang, Ming Feng, Renzhi Wang, Jianhua Yao |
| 2021 | MICCAI | Intracerebral Haemorrhage Growth Prediction Based on Displacement Vector Field and Clinical Metadata. | Ting Xiao, Han Zheng, Xiaoning Wang, Xinghan Chen, Jianbo Chang, Jianhua Yao, Hong Shang, Peng Liu |
| 2021 | MICCAI | Hierarchical Attention Guided Framework for Multi-resolution Collaborative Whole Slide Image Segmentation. | Jiangpeng Yan, Hanbo Chen, Kang Wang, Yan Ji, Yuyao Zhu, Jingjing Li, Dong Xie, Zhe Xu, Junzhou Huang, Shuqun Cheng, Xiu Li, Jianhua Yao |
| 2020 | CVPR | Predicting Lymph Node Metastasis Using Histopathological Images Based on Multiple Instance Learning With Deep Graph Convolution. | Yu Zhao, Fan Yang, Yuqi Fang, Hailing Liu, Niyun Zhou, Jun Zhang, Jiarui Sun, Sen Yang, Bjoern H. Menze, Xinjuan Fan, Jianhua Yao |
| 2020 | MICCAI | Deep Active Learning for Breast Cancer Segmentation on Immunohistochemistry Images. | Haocheng Shen, Kuan Tian, Pei Dong, Jun Zhang, Kezhou Yan, Shannon Che, Jianhua Yao, Pifu Luo, Xiao Han |
| 2020 | MICCAI | Weakly-Supervised Nucleus Segmentation Based on Point Annotations: A Coarse-to-Fine Self-Stimulated Learning Strategy. | Kuan Tian, Jun Zhang, Haocheng Shen, Kezhou Yan, Pei Dong, Jianhua Yao, Shannon Che, Pifu Luo, Xiao Han |
| 2020 | MICCAI | Asynchronous in Parallel Detection and Tracking (AIPDT): Real-Time Robust Polyp Detection. | Zijian Zhang, Hong Shang, Han Zheng, Xiaoning Wang, Jiajun Wang, Zhongqian Sun, Junzhou Huang, Jianhua Yao |
| 2019 | MICCAI | Rectified Cross-Entropy and Upper Transition Loss for Weakly Supervised Whole Slide Image Classifier. | Hanbo Chen, Xiao Han, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Junzhou Huang, Jianhua Yao |
| 2019 | MICCAI | From Whole Slide Imaging to Microscopy: Deep Microscopy Adaptation Network for Histopathology Cancer Image Classification. | Yifan Zhang, Hanbo Chen, Ying Wei, Peilin Zhao, Jiezhang Cao, Xinjuan Fan, Xiaoying Lou, Hailing Liu, Jinlong Hou, Xiao Han, Jianhua Yao, Qingyao Wu, Mingkui Tan, Junzhou Huang |
| 2019 | MICCAI | Enhanced Cycle-Consistent Generative Adversarial Network for Color Normalization of H&E Stained Images. | Niyun Zhou, De Cai, Xiao Han, Jianhua Yao |
| 2017 | MICCAI | Holistic Segmentation of Intermuscular Adipose Tissues on Thigh MRI. | Jianhua Yao, William Kovacs, Nathan Hsieh, Chia-Ying Liu, Ronald M. Summers |
| 2017 | MICCAI | Personalized Pancreatic Tumor Growth Prediction via Group Learning. | Ling Zhang, Le Lu, Ronald M. Summers, Electron Kebebew, Jianhua Yao |
| 2017 | WACV | Unsupervised Joint Mining of Deep Features and Image Labels for Large-Scale Radiology Image Categorization and Scene Recognition. | Xiaosong Wang, Le Lu, Hoo-Chang Shin, Lauren Kim, Mohammadhadi Bagheri, Isabella Nogues, Jianhua Yao, Ronald M. Summers |
| 2016 | CVPR | Learning to Read Chest X-Rays: Recurrent Neural Cascade Model for Automated Image Annotation. | Hoo-Chang Shin, Kirk Roberts, Le Lu, Dina Demner-Fushman, Jianhua Yao, Ronald M. Summers |
| 2016 | MICCAI | Detection of Degenerative Osteophytes of the Spine on PET/CT Using Region-Based Convolutional Neural Networks. | Yinong Wang, Jianhua Yao, Joseph E. Burns, Jiamin Liu, Ronald M. Summers |
| 2015 | CVPR | Interleaved text/image Deep Mining on a large-scale radiology database. | Hoo-Chang Shin, Le Lu, Lauren Kim, Ari Seff, Jianhua Yao, Ronald M. Summers |
| 2015 | MICCAI | Multi-atlas Segmentation with Joint Label Fusion of Osteoporotic Vertebral Compression Fractures on CT. | Yinong Wang, Jianhua Yao, Holger R. Roth, Joseph E. Burns, Ronald M. Summers |
| 2015 | MICCAI | Computer-Aided Infarction Identification from Cardiac CT Images: A Biomechanical Approach with SVM. | Ken C. L. Wong, Michael Tee, Marcus Chen, David A. Bluemke, Ronald M. Summers, Jianhua Yao |
| 2014 | MICCAI | Tumor Growth Prediction with Hyperelastic Biomechanical Model, Physiological Data Fusion, and Nonlinear Optimization. | Ken C. L. Wong, Ronald M. Summers, Electron Kebebew, Jianhua Yao |
| 2013 | MICCAI | Multimodal Image Driven Patient Specific Tumor Growth Modeling. | Yixun Liu, Samira M. Sadowski, Allison B. Weisbrod, Electron Kebebew, Ronald M. Summers, Jianhua Yao |
| 2013 | MICCAI | A Variational Framework for Joint Detection and Segmentation of Ovarian Cancer Metastases. | Jianfei Liu, Shijun Wang, Marius George Linguraru, Jianhua Yao, Ronald M. Summers |
| 2013 | MICCAI | Manifold Diffusion for Exophytic Kidney Lesion Detection on Non-contrast CT Images. | Jianfei Liu, Shijun Wang, Jianhua Yao, Marius George Linguraru, Ronald M. Summers |
| 2012 | ECOOP | Static Sessional Dataflow. | Dominic Duggan, Jianhua Yao |
| 2012 | MICCAI | Co-segmentation of Functional and Anatomical Images. | Ulas Bagci, Jayaram K. Udupa, Jianhua Yao, Daniel J. Mollura |
| 2012 | MICCAI | A Fully Automated Framework for Renal Cortex Segmentation. | Xinjian Chen, Hemin Zhao, Jianhua Yao |
| 2012 | MICCAI | Detection of Vertebral Body Fractures Based on Cortical Shell Unwrapping. | Jianhua Yao, Joseph E. Burns, Hector Munoz, Ronald M. Summers |
| 2012 | POPL | Sessional dataflow: short paper. | Dominic Duggan, Jianhua Yao |
| 2011 | ICIP | Detection of pelvic fractures using graph cuts and curvatures. | Ananda S. Chowdhury, Joseph E. Burns, Bhaskar Sen, Arka Mukherjee, Jianhua Yao, Ronald M. Summers |
| 2011 | MICCAI | Learning Shape and Texture Characteristics of CT Tree-in-Bud Opacities for CAD Systems. | Ulas Bagci, Jianhua Yao, Jesus Caban, Anthony F. Suffredini, Tara N. Palmore, Daniel J. Mollura |
| 2011 | MICCAI | Renal Cortex Segmentation Using Optimal Surface Search with Novel Graph Construction. | Xiuli Li, Xinjian Chen, Jianhua Yao, Xing Zhang, Jie Tian |
| 2010 | ICIP | Improved method for predicting polyp location from CT colonography for optical colonoscopy. | Kevin W. Chang, Jiamin Liu, Jianhua Yao, Ronald M. Summers |
| 2010 | ICIP | 3D automatic anatomy segmentation based on graph cut-oriented active appearance models. | Xinjian Chen, Jianhua Yao, Ying Zhuge, Ulas Bagci |
| 2010 | ICIP | Tracking kidney tumor dimensional measurements via image morphing. | Nathaniel Strawn, Jianhua Yao |
| 2010 | MICCAI | Characterizing Colonic Detections in CT Colonography Using Curvature-Based Feature Descriptor and Bag-of-Words Model. | Javed M. Aman, Ronald M. Summers, Jianhua Yao |
| 2010 | MICCAI | Teniae Coli Extraction in Human Colon for Computed Tomographic Colonography Images. | Zhuoshi Wei, Jianhua Yao, Shijun Wang, Ronald M. Summers |
| 2009 | MICCAI | Statistical Location Model for Abdominal Organ Localization. | Jianhua Yao, Ronald M. Summers |
| 2008 | ICPR | Detection of anatomical landmarks in human colon from computed tomographic colonography images. | Ananda S. Chowdhury, Jianhua Yao, Robert L. Van Uitert Jr., Marius George Linguraru, Ronald M. Summers |
| 2008 | ICPR | Matching colonic polyps from prone and supine CT colonography scans based on statistical curvature information. | Shijun Wang, Jianhua Yao, Ronald M. Summers |
| 2008 | ICPR | Computer-aided grading of lymphangioleiomyomatosis (LAM) using HRCT. | Jianhua Yao, Nilo Avila, Andrew Dwyer, Angelo M. Taveira-DaSilva, Olanda M. Hathaway, Joel Moss |
| 2008 | MICCAI | Automatic Determination of Arterial Input Function for Dynamic Contrast Enhanced MRI in Tumor Assessment. | Jeremy Chen, Jianhua Yao, David Thomasson |
| 2007 | ICIP | CT Colonography Computer-Aided Polyp Detection using Topographical Height Map. | Jianhua Yao, Jiang Li, Ronald M. Summers |
| 2006 | SNPD | DCE-MRI Segmentation and Motion Correction Based on Active Contour Model and Forward Mapping. | Wenzhu Lu, Jianhua Yao, Chao Lu, Sheila A. Prindiville, Catherine Chow |
| 2005 | FlAIRS | An Efficient Feature Selection Algorithm for Computer-Aided Polyp Detection. | Jiang Li, Jianhua Yao, Ronald M. Summers, Amy K. Hara |
| 2003 | ICCV | Assessing Accuracy Factors in Deformable 2D/3D Medical Image Registration Using a Statistical Pelvis Model. | Jianhua Yao, Russell H. Taylor |
| 2000 | MICCAI | Tetrahedral Mesh Modeling of Density Data for Anatomical Atlases and Intensity-Based Registration. | Jianhua Yao, Russell H. Taylor |
| 1999 | MICCAI | A Progressive Cut Refinement Scheme for Revision Total Hip Replacement Surgery Using C-arm Fluoroscopy. | Jianhua Yao, Russell H. Taylor, Randal P. Goldberg, Rajesh Kumar, Andrew Bzostek, Robert Van Vorhis, Peter Kazanzides, Andr Guziec, Janez Funda |