| 2026 | AAAI | Closer to Biological Mechanism: Drug-Drug Interaction Prediction from the Perspective of Pharmacophore. | Mingliang Dou, Linfeng Wen, Jinyang Xie, Jijun Tang, Shiqiang Ma, Fei Guo |
| 2025 | MICCAI | DCT-Net: Dual-Branch CT Reconstruction from Orthogonal X-Rays with Diffusion Model and Contrastive Learning. | Zhiyu Zhang, Cong Shen, Jijun Tang, Zhijun Liao |
| 2024 | DASFAA | SiamSegNet: A multimodal Segmentation Method Based on Cross-modal Generation for Medical Image Segmentation. | Shiqiang Ma, Fei Guo, Jijun Tang |
| 2015 | WABI | Maximum Parsimony Analysis of Gene Copy Number Changes. | Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Jijun Tang |
| 2014 | COCOON | A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. | Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader |
| 2013 | FDG | Exploring genomes with a game engine. | Jeremiah J. Shepherd, Bill Arndt, W. Jim Zheng, Yun Zhu, Jijun Tang |
| 2013 | ICCS | Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. | Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader |
| 2013 | PSB | Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes. | Yu Lin, Fei Hu, Jijun Tang, Bernard M. E. Moret |
| 2011 | CIBCB | Maximum likelihood phylogenetic reconstruction using gene order encodings. | Fei Hu, Nan Gao, Meng Zhang, Jijun Tang |
| 2011 | CIBCB | Isolating - a new resampling method for gene order data. | Jian Shi, William Arndt, Fei Hu, Jijun Tang |
| 2011 | FDG | A different approach to teaching Chinese through serious games. | Jeremiah J. Shepherd, Renaldo J. Doe, Matthew Arnold, Yun Zhu, Jijun Tang |
| 2009 | PSB | An Exact Solver for the DCJ Median Problem. | Meng Zhang, William Arndt, Jijun Tang |
| 2008 | APBC | Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. | Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret |
| 2008 | BIBE | Phylogenetic reconstruction with disk-covering and Bayesian approaches. | Yan Guo, Fei Ye, Jijun Tang |
| 2008 | WABI | A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem. | Meng Zhang, William Arndt, Jijun Tang |
| 2007 | BIBE | FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data. | Jason D. Bakos, Panormitis E. Elenis, Jijun Tang |
| 2007 | BIBE | A Heuristic for Phylogenetic Reconstruction Using Transposition. | Feng Yue, Meng Zhang, Jijun Tang |
| 2007 | CVPR | A Fast 3D Correspondence Method for Statistical Shape Modeling. | Pahal Dalal, Brent C. Munsell, Song Wang, Jijun Tang, Kenton Oliver, Hiroaki Ninomiya, Xiangrong Zhou, Hiroshi Fujita |
| 2007 | RECOMB | Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. | William Arndt, Jijun Tang |
| 2006 | TAMC | Succinct Text Indexes on Large Alphabet. | Meng Zhang, Jijun Tang, Dong Guo, Liang Hu, Qiang Li |
| 2005 | BIBE | Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. | Jijun Tang, Li-San Wang |
| 2005 | COCOON | Quartet-Based Phylogeny Reconstruction from Gene Orders. | Tao Liu, Jijun Tang, Bernard M. E. Moret |
| 2005 | CPM | Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. | Jijun Tang, Bernard M. E. Moret |
| 2004 | BIBE | Phylogenetic Reconstruction from Arbitrary Gene-Order Data. | Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis |
| 2003 | ISMB | Scaling up accurate phylogenetic reconstruction from gene-order data. | Jijun Tang, Bernard M. E. Moret |
| 2003 | WADS | Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. | Jijun Tang, Bernard M. E. Moret |
| 2002 | WABI | Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. | Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu |