| 2012 | ISVC | A Dual Method for Constructing Multi-material Solids from Ray-Reps. | Powei Feng, Joe D. Warren |
| 2010 | GMP | Piecewise Tri-linear Contouring for Multi-material Volumes. | Powei Feng, Tao Ju, Joe D. Warren |
| 2009 | ISVC | Fast Cube Cutting for Interactive Volume Visualization. | Travis McPhail, Powei Feng, Joe D. Warren |
| 2007 | PG | Exact Evaluation of Non-Polynomial Subdivision Schemes at Rational Parameter Values. | Scott Schaefer, Joe D. Warren |
| 2005 | MICCAI | Hybrid Segmentation Framework for Tissue Images Containing Gene Expression Data. | Musodiq Bello, Tao Ju, Joe D. Warren, James P. Carson, Wah Chiu, Christina Thaller, Gregor Eichele, Ioannis A. Kakadiaris |
| 2005 | SGP | A Geometric Construction of Coordinates for Convex Polyhedra using Polar Duals. | Tao Ju, Scott Schaefer, Joe D. Warren, Mathieu Desbrun |
| 2004 | MICCAI | Landmark-Driven, Atlas-Based Segmentation of Mouse Brain Tissue Images Containing Gene Expression Data. | Ioannis A. Kakadiaris, Musodiq Bello, Shiva Arunachalam, Wei Kang, Tao Ju, Joe D. Warren, James P. Carson, Wah Chiu, Christina Thaller, Gregor Eichele |
| 2004 | PG | Dual Marching Cubes: Primal Contouring of Dual Grids. | Scott Schaefer, Joe D. Warren |
| 2004 | SGP | Smooth Subdivision of Tetrahedral Meshes. | Scott Schaefer, Jan Hakenberg, Joe D. Warren |
| 2004 | SGP | Lofting Curve Networks using Subdivision Surfaces. | Scott Schaefer, Joe D. Warren, Denis Zorin |
| 2003 | SGP | Smooth Geometry Images. | Frank Losasso, Hugues Hoppe, Scott Schaefer, Joe D. Warren |
| 2003 | SGP | A geometric database for gene expression data. | Joe D. Warren, Tao Ju, Gregor Eichele, Christina Thaller, Wah Chiu, James P. Carson |
| 2002 | GMP | Acoustics Scattering on Arbitrary Manifold Surfaces. | Chandrajit L. Bajaj, Guoliang Xu, Joe D. Warren |
| 1999 | SIGGRAPH | Subdivision Schemes for Fluid Flow. | Henrik Weimer, Joe D. Warren |
| 1998 | ICRA | Planning Paths for a Flexible Surface Patch. | Christopher Holleman, Lydia E. Kavraki, Joe D. Warren |
| 1989 | ISSAC | Factoring Rational Polynomials over the Complexes. | Chandrajit L. Bajaj, John F. Canny, R. Garrity, Joe D. Warren |
| 1984 | POPL | A Hierarchical Basis for Reordering Transformations. | Joe D. Warren |
| 1983 | POPL | Conversion of Control Dependence to Data Dependence. | John R. Allen, Ken Kennedy, Carrie Porterfield, Joe D. Warren |