| 2023 | ESANN | Convolutional Transformer via Graph Embeddings for Few-shot Toxicity and Side Effect Prediction. | Luis H. M. Torres, Bernardete Ribeiro, Joel Arrais |
| 2021 | ESANN | Multiobjective Reinforcement Learning in Optimized Drug Design. | Maryam Abbasi, Tiago Pereira, Beatriz P. Santos, Bernardete Ribeiro, Joel Arrais |
| 2021 | ESANN | Decay Momentum for Improving Federated Learning. | Miguel Fernandes, Catarina Silva, Joel Arrais, Alberto Cardoso, Bernardete Ribeiro |
| 2021 | ESANN | Improvement on Generative Adversarial Network for Targeted Drug Design. | Beatriz P. Santos, Maryam Abbasi, Tiago Pereira, Bernardete Ribeiro, Joel Arrais |
| 2020 | BIBE | Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. | Luis H. M. Torres, Nelson R. C. Monteiro, Jos Lus Oliveira, Joel Arrais, Bernardete Ribeiro |
| 2009 | IC3K | Link Integrator - A Link-based Data Integration Architecture. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2009 | IWANN | DynamicFlow: A Client-Side Workflow Management System. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2008 | IIWAS | Dynamic service integration using web-based workflows. | Pedro Lopes, Joel Arrais, Jos Lus Oliveira |
| 2004 | FPL | Hardware/Software Implementation of FPGA-Targeted Matrix-Oriented SAT Solvers. | Valery Sklyarov, Iouliia Skliarova, Bruno Figueiredo Pimentel, Joel Arrais |