| 2025 | CogSci | The Role of Structural Input Features in Statistical Learning. | Danaja Rutar, Erwin de Wolff, Johan Kwisthout |
| 2025 | ECSQARU | Inverse Marginalisation for Safely Expanding Bayesian Networks. | Johan Kwisthout, Silja Renooij |
| 2021 | CogSci | Certainly Strange: A Probabilistic Perspective on Ignorance. | Erwin de Wolff, Iris van Rooij, Johan Kwisthout |
| 2021 | ECSQARU | Explainable AI Using MAP-Independence. | Johan Kwisthout |
| 2017 | CogSci | Perception is in the Details: A Predictive Coding Account of the Psychedelic Phenomenon. | Sarit Pink-Hashkes, Iris van Rooij, Johan Kwisthout |
| 2015 | CogSci | What senses of agency can infants have? | Lorijn Zaadnoordijk, Sabine Hunnius, Marlene Meyer, Johan Kwisthout, Iris van Rooij |
| 2014 | CogSci | Leaving Andy Clark's 'safe shores': Scaling predictive processing to higher cognition. | Johan Kwisthout, Maria Otworowska, Harold Bekkering, Iris van Rooij |
| 2013 | CogSci | Predictive coding and the Bayesian brain: Intractability hurdles that are yet to be overcome. | Johan Kwisthout, Iris van Rooij |
| 2013 | CogSci | Constraints on Bayesian Explanation. | Johan Kwisthout, Iris van Rooij, Matteo Colombo, Carlos Zednik, William A. Phillips |
| 2013 | CogSci | Computational complexity analysis for cognitive scientists. | Iris van Rooij, Johan Kwisthout, Mark Blokpoel, Todd Wareham |
| 2013 | ECSQARU | Most Inforbable Explanations: Finding Explanations in Bayesian Networks That Are Both Probable and Informative. | Johan Kwisthout |
| 2013 | ECSQARU | Structure Approximation of Most Probable Explanations in Bayesian Networks. | Johan Kwisthout |
| 2011 | CogSci | The computational costs of recipient design and intention recognition in communication. | Mark Blokpoel, Johan Kwisthout, Todd Wareham, Pim Haselager, Ivan Toni, Iris van Rooij |
| 2011 | SOFSEM | The Complexity of Finding | Johan Kwisthout, Hans L. Bodlaender, Linda C. van der Gaag |
| 2010 | ECAI | The Necessity of Bounded Treewidth for Efficient Inference in Bayesian Networks. | Johan Kwisthout, Hans L. Bodlaender, Linda C. van der Gaag |
| 2008 | UAI | The Computational Complexity of Sensitivity Analysis and Parameter Tuning. | Johan Kwisthout, Linda C. van der Gaag |
| 2007 | ECSQARU | Local Monotonicity in Probabilistic Networks. | Johan Kwisthout, Hans L. Bodlaender, Gerard Tel |
| 2007 | FCT | The Computational Complexity of Monotonicity in Probabilistic Networks. | Johan Kwisthout |